Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008911

Physical Location & Seq

Genomic Coordinates Reverse (-)

12140093 .. 12140551

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027492

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACCAACTCAGATGATAGAAAACCGTTCTCCGAGGTCTGCAAGCAATGGTGGAGAGTGGAGGGTCTAAACCAAACATCCATTCGTCTTCCCCAACTAGATTATCTCCGGCGTGTACTTCCCAGATTCCCAAACCTAGTCACATTTGAAACATCCAAATGTATCACCCGAAATAACAACGAGTTCTTGGCCCAAACATGTCCCAAAATCGAGGCCATCGACCTTGGAAAACCCAGAGATGATGTAACAGTAGAACCTAGGTATTCTGGGATCGAAGTTCTGTATGCTTTGGCACATAGCTGCCCAAAATTGTCCAGGGATTCTCTGAGAAGGAGAGACTACACTATTACTCCACTCATAAAAGCACAAAACAAGTTGAGGCATTTGGATTTGGGTTATTGCTGTGTGTTAAATGAATCCCTTGAAGCGATTGGTCGTTCAGTTGTCTTAGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

8.97

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008911)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0307011
rosa_laevigata	RLG00000010742 RLG00000010743 RLG00000027492
rosa_multiflora	Rmu_sc0000294.1_g000037 Rmu_sc0005634.1_g000009 Rmu_sc0005634.1_g000010
rosa_roxburghii	Rroxscaffold_4G00292410 Rroxscaffold_7G00161230 Rroxscaffold_7G00161240
rosa_rugosa	Rorug06G0355200
rosa_samantha	Rh1BG285900 Rh1DG317400 Rh6BG433700 Rh6BG433800 Rh6BG434100 Rh6BG501300 Rh6CG481900 Rh6CG482200 Rh6CG482300 Rh6DG468200 Rh6DG468500
rosa_wichuraiana	Rw1G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	278
AfaI	GTAC	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	149, 425
AjnI	CCWGG	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	300, 452
AluI	AGCT	2 cut(s)	300, 452
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	2 cut(s)	189, 213
ApeKI	GCWGC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	157
AvrII	CCTAGG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	3 cut(s)	98, 137, 258
BisI	GCNGC	1 cut(s)	301
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	33, 223, 257, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	33, 223, 257, 315
BseGI	GGATG	2 cut(s)	77, 152
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	24, 317
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	191, 215
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	191, 215
Bsp143I	GATC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	191, 215
BspCNI	CTCAG	2 cut(s)	23, 318
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	33, 223, 257, 315
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	2 cut(s)	223, 257
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	27, 250
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	10, 326, 448
BstF5I	GGATG	2 cut(s)	77, 152
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	191, 215
BtsCI	GGATG	2 cut(s)	77, 152
Cac8I	GCNNGC	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	4 cut(s)	191, 215, 300, 452
CviKI_1	RGCY	4 cut(s)	191, 215, 300, 452
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	10, 326, 448
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	223, 257
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	223, 257
ErhI	CCWWGG	2 cut(s)	223, 257
FaeI	CATG	1 cut(s)	201
FaiI	YATR	4 cut(s)	199, 285, 297, 359
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	2 cut(s)	64, 139
Fsp4HI	GCNGC	1 cut(s)	301
FspBI	CTAG	3 cut(s)	98, 137, 258
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	191, 215
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	3 cut(s)	126, 320, 416
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	13, 34, 327
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	27, 250
HpyCH4V	TGCA	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	10, 326, 448
Hsp92II	CATG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	270
LpnPI	CCDG	6 cut(s)	122, 136, 247, 252, 301, 328
Lsp1109I	GCAGC	1 cut(s)	287
MaeI	CTAG	3 cut(s)	98, 137, 258
MaeIII	GTNAC	2 cut(s)	139, 244
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	80
MluCI	AATT	1 cut(s)	308
MnlI	CCTC	4 cut(s)	28, 55, 205, 372
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	201
PciI	ACATGT	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	126, 320, 416
PkrI	GCNGC	1 cut(s)	302
PscI	ACATGT	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspPI	GGNCC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	316
SetI	ASST	7 cut(s)	39, 138, 225, 259, 263, 302, 454
SmiMI	CAYNNNNRTG	1 cut(s)	157
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	3 cut(s)	98, 137, 258
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	2 cut(s)	223, 257
TaaI	ACNGT	2 cut(s)	27, 250
TaqI	TCGA	3 cut(s)	210, 219, 273
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	126, 320, 416
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	429
XceI	RCATGY	1 cut(s)	201
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	3 cut(s)	98, 137, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.