Rh6CG482200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008911
Physical Location & Seq
Reverse (-)
64870631 .. 64873048
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG482200.1

Sequence Viewer

Length: 810 bp
ATGTCCTCGCGGGTAGTGCATAGTAGACTACACCATGGGGATGACTCTGTTGGTTGTTTCAGCGAGATGAGTGGAAATGGGAAAACGGTTTCAGAAGCCAAAAAAGTATGCAAAATTTCTGTAATGGATGATGAGGATCTGCTTGCTCTAATCGTCAATAAGATTAGCAACCCAGATGATAGAAGATCGTTTTCGGAGGTCTGCAAGCAATGGCTGAGAGTGGAAGGTCTAAACCGATCATCCCTTCGTCTTCTCCGATCCGAATATCTCCATCAGGTACTCCCTAGATTCCCAAATTTACTCACATTTGAAACTTCCAAGCCTATCACTCAAACCAACCTCAAGTTCATAGCTCAAACTTGTCGCGATCTCGAGGCCATCAACCTCAGTACCAAAGATCACCCTCCATTTAAGAAAAGTCCTGACTATTGGGTCGATGGTATGAGCGTTTTGGCAAAGGGGTGTCCCAAACTATCCCGGGTTATGCTTAGACGGAGATCGGTGAATGTTCATCTTACGTTTTTAAACTCAGCACACAATTTGACACATTTGGATTTGGGACATTGCTTGGTCTTGGACGAAGACCTCGAAGCAATTGGGTCTTGTAGTTCGATTAGCTACTTGAATTTGAAATGGGGTCTAATCACGGATGAAGGATTGGGTTTTCTGGCAAATGGTTCTTGCTCGAAAACCCTCAAGACATTGATCCTTGCTCAGTGTGACGAGATTACAGATGTTGGGGGTCTCGCTTTTGCACAAAATGAGCTGCTTGGAGTAGCTGAATTTGGCTTGGTTGTCAAAAGTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

269

Amino Acids

29.87

Weight (kDa)

7.12

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 174 - 247 3.9e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 431
AccI GTMKAC 1 cut(s) 25
AccII CGCG 2 cut(s) 10, 366
AciI CCGC 1 cut(s) 10
AclWI GGATC 3 cut(s) 144, 252, 700
AcsI RAATTY 4 cut(s) 114, 295, 625, 782
AfaI GTAC 2 cut(s) 279, 391
AgsI TTSAA 3 cut(s) 311, 625, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 4 cut(s) 353, 618, 766, 779
AluI AGCT 4 cut(s) 353, 618, 766, 779
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 3 cut(s) 144, 252, 700
Ama87I CYCGRG 2 cut(s) 371, 477
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 4 cut(s) 114, 295, 625, 782
AsuC2I CCSGG 2 cut(s) 478, 479
AsuHPI GGTGA 2 cut(s) 392, 514
AvaI CYCGRG 2 cut(s) 371, 477
BaeI ACNNNNGTAYC 2 cut(s) 373, 406
BbsI GAAGAC 2 cut(s) 242, 588
BbvI GCAGC 1 cut(s) 753
BccI CCATC 3 cut(s) 279, 386, 431
BcnI CCSGG 2 cut(s) 478, 479
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 1 cut(s) 285
BisI GCNGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 478, 479
BmeT110I CYCGRG 2 cut(s) 371, 477
BmrFI CCNGG 2 cut(s) 478, 479
BpiI GAAGAC 2 cut(s) 242, 588
BpuEI CTTGAG 2 cut(s) 326, 680
BpuMI CCSGG 2 cut(s) 478, 479
BsaBI GATNNNNATC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 34, 477
Bse3DI GCAATG 2 cut(s) 215, 562
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 34, 477
BseGI GGATG 4 cut(s) 46, 133, 239, 655
BseJI GATNNNNATC 1 cut(s) 135
BseMI GCAATG 2 cut(s) 215, 562
BseMII CTCAG 4 cut(s) 206, 400, 543, 728
BseXI GCAGC 1 cut(s) 753
Bsh1236I CGCG 2 cut(s) 10, 366
BshFI GGCC 1 cut(s) 377
BsiHKCI CYCGRG 2 cut(s) 371, 477
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 2 cut(s) 450, 573
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 2 cut(s) 450, 573
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 2 cut(s) 371, 477
Bsp143I GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
Bsp19I CCATGG 1 cut(s) 34
Bsp68I TCGCGA 1 cut(s) 366
BspACI CCGC 1 cut(s) 10
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 4 cut(s) 207, 399, 542, 727
BspFNI CGCG 2 cut(s) 10, 366
BspPI GGATC 3 cut(s) 144, 252, 700
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 2 cut(s) 215, 562
BssECI CCNNGG 2 cut(s) 34, 477
BssMI GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
BssT1I CCWWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 144, 206
BstDEI CTNAG 5 cut(s) 215, 386, 488, 529, 714
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 46, 133, 239, 655
BstFNI CGCG 2 cut(s) 10, 366
BstKTI GATC 8 cut(s) 139, 188, 239, 260, 370, 400, 500, 708
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 476, 477
BstUI CGCG 2 cut(s) 10, 366
BstV1I GCAGC 1 cut(s) 753
BstV2I GAAGAC 2 cut(s) 242, 588
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 4 cut(s) 46, 133, 239, 655
BtsIMutI CAGTG 2 cut(s) 722, 805
BtuMI TCGCGA 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 144, 206
Cfr9I CCCGGG 1 cut(s) 477
Csp6I GTAC 2 cut(s) 278, 390
CviAII CATG 1 cut(s) 35
CviJI RGCY 9 cut(s) 98, 214, 322, 353, 377, 618, 766, 779, 789
CviKI_1 RGCY 9 cut(s) 98, 214, 322, 353, 377, 618, 766, 779, 789
CviQI GTAC 2 cut(s) 278, 390
DdeI CTNAG 5 cut(s) 215, 386, 488, 529, 714
DpnI GATC 8 cut(s) 138, 187, 238, 259, 369, 399, 499, 707
DpnII GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
DraI TTTAAA 1 cut(s) 525
DrdI GACNNNNNNGTC 1 cut(s) 431
DseDI GACNNNNNNGTC 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 749
Eco88I CYCGRG 2 cut(s) 371, 477
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 1 cut(s) 38
FaiI YATR 6 cut(s) 21, 36, 109, 350, 443, 485
FaqI GGGAC 2 cut(s) 450, 573
FatI CATG 1 cut(s) 34
FauI CCCGC 1 cut(s) 3
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 767
FokI GGATG 4 cut(s) 53, 140, 226, 662
Fsp4HI GCNGC 1 cut(s) 767
FspBI CTAG 1 cut(s) 285
GluI GCNGC 1 cut(s) 767
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 478
Hin1II CATG 1 cut(s) 38
HinfI GANTC 2 cut(s) 44, 288
HpaII CCGG 1 cut(s) 478
HphI GGTGA 2 cut(s) 392, 514
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 4 cut(s) 94, 196, 257, 262
Hpy188III TCNNGA 4 cut(s) 365, 371, 422, 697
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 218, 254, 647
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 4 cut(s) 19, 111, 204, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 5 cut(s) 215, 386, 488, 529, 714
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
LpnPI CCDG 5 cut(s) 186, 260, 435, 491, 653
Lsp1109I GCAGC 1 cut(s) 753
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 2 cut(s) 719, 803
MalI GATC 8 cut(s) 138, 187, 238, 259, 369, 399, 499, 707
MboI GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
MboII GAAGA 3 cut(s) 195, 242, 593
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 136
MluCI AATT 6 cut(s) 114, 295, 538, 594, 625, 782
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 9 cut(s) 16, 127, 190, 350, 367, 395, 414, 596, 704
MseI TTAA 2 cut(s) 411, 524
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 478, 479
MunI CAATTG 1 cut(s) 594
MvnI CGCG 2 cut(s) 10, 366
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 2 cut(s) 478, 479
NcoI CCATGG 1 cut(s) 34
NdeII GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 719, 803
NruI TCGCGA 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 371
PcsI WCGNNNNNNNCGW 2 cut(s) 253, 585
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 768
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 136
RruI TCGCGA 1 cut(s) 366
RsaI GTAC 2 cut(s) 279, 391
RsaNI GTAC 2 cut(s) 278, 390
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 411, 524
SatI GCNGC 1 cut(s) 767
Sau3AI GATC 8 cut(s) 136, 185, 236, 257, 367, 397, 497, 705
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 478, 479
Sfr274I CTCGAG 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 3 cut(s) 341, 371, 695
SmoI CTYRAG 3 cut(s) 341, 371, 695
Sse9I AATT 6 cut(s) 114, 295, 538, 594, 625, 782
SsiI CCGC 1 cut(s) 10
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 476, 477
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 521
TaqI TCGA 5 cut(s) 372, 435, 588, 611, 686
TasI AATT 6 cut(s) 114, 295, 538, 594, 625, 782
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 411, 524
Tru9I TTAA 2 cut(s) 411, 524
TscAI CASTG 1 cut(s) 722
TseFI GTSAC 2 cut(s) 719, 803
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 2 cut(s) 719, 803
TspDTI ATGAA 3 cut(s) 337, 500, 666
TspGWI ACGGA 2 cut(s) 508, 662
TspMI CCCGGG 1 cut(s) 477
TspRI CASTG 1 cut(s) 722
XapI RAATTY 4 cut(s) 114, 295, 625, 782
XhoI CTCGAG 1 cut(s) 371
XmaI CCCGGG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 25
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.