Rh6BG434100

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008911
Physical Location & Seq
Forward (+)
65414473 .. 65414835
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434100.1

Sequence Viewer

Length: 363 bp
ATGTTTAGCCCAACCCACTTGACAGAGAGCATCCAGTTGGTTTGGTTCAGGCATTCAGCAAAGAGAGTCAGAGTACCAAGCCAAAGCAGAGAGAAAATGGCCAGAAATTTAGGGAGAATTTGTTTGCTGGGTGAGGATGAACTAGCCCTAATCGTCAACAAGGTTAGCCACCCGGCTGATCAGAAATCGTTCTCGGAGGTCTGCAAGCTATGGTATAAAGTGGAGAGTCTAAACCGATCATCACTTCGTCTTCTCGGTCCCGATTTTCCCCGTCAGGTACTCCCAAGATTCCCAAATTTAGTCAAATTCGAAACATCCCACTCCATCACGGATGATGATCTGGAATTTTTGGGCCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

120

Amino Acids

13.87

Weight (kDa)

9.1

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 5 cut(s) 106, 117, 295, 305, 344
AfaI GTAC 2 cut(s) 75, 279
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AoxI GGCC 2 cut(s) 99, 352
ApoI RAATTY 5 cut(s) 106, 117, 295, 305, 344
Asp700I GAANNNNTTC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 257, 352
AsuC2I CCSGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 143
AsuII TTCGAA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 242
BccI CCATC 1 cut(s) 332
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 257, 352
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 336
BseGI GGATG 4 cut(s) 30, 142, 314, 337
BseJI GATNNNNATC 1 cut(s) 336
BseNI ACTGG 1 cut(s) 34
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 101, 354
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 2 cut(s) 101, 354
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 3 cut(s) 178, 236, 337
BspANI GGCC 2 cut(s) 101, 354
BspLI GGNNCC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 309
BsrI ACTGG 1 cut(s) 34
BssMI GATC 3 cut(s) 178, 236, 337
BstBI TTCGAA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 206
BstF5I GGATG 4 cut(s) 30, 142, 314, 337
BstKTI GATC 3 cut(s) 181, 239, 340
BstMBI GATC 3 cut(s) 178, 236, 337
BstSCI CCNGG 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 242
BsuRI GGCC 2 cut(s) 101, 354
BtsCI GGATG 4 cut(s) 30, 142, 314, 337
Cac8I GCNNGC 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 257, 352
Csp6I GTAC 2 cut(s) 74, 278
CviJI RGCY 8 cut(s) 9, 81, 101, 146, 168, 176, 208, 354
CviKI_1 RGCY 8 cut(s) 9, 81, 101, 146, 168, 176, 208, 354
CviQI GTAC 2 cut(s) 74, 278
DpnI GATC 3 cut(s) 180, 238, 339
DpnII GATC 3 cut(s) 178, 236, 337
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 257
FaiI YATR 2 cut(s) 211, 216
FaqI GGGAC 1 cut(s) 243
FbaI TGATCA 1 cut(s) 178
FokI GGATG 4 cut(s) 17, 149, 301, 344
FspBI CTAG 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 2 cut(s) 101, 354
HapII CCGG 1 cut(s) 173
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 3 cut(s) 66, 226, 288
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 71, 183, 196
Hpy188III TCNNGA 2 cut(s) 260, 341
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 178, 236, 337
LpnPI CCDG 7 cut(s) 34, 47, 113, 115, 186, 260, 326
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 143
MalI GATC 3 cut(s) 180, 238, 339
MboI GATC 3 cut(s) 178, 236, 337
MboII GAAGA 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 5 cut(s) 106, 117, 295, 305, 344
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 2 cut(s) 75, 235
MnlI CCTC 2 cut(s) 127, 190
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 188
MscI TGGCCA 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 101
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 52
NciI CCSGG 1 cut(s) 173
NdeII GATC 3 cut(s) 178, 236, 337
NlaIV GGNNCC 1 cut(s) 259
NspV TTCGAA 1 cut(s) 309
PctI GAATGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 288
PleI GAGTC 2 cut(s) 74, 234
PpsI GAGTC 2 cut(s) 74, 234
PspFI CCCAGC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 257, 352
RsaI GTAC 2 cut(s) 75, 279
RsaNI GTAC 2 cut(s) 74, 278
Sau3AI GATC 3 cut(s) 178, 236, 337
Sau96I GGNCC 2 cut(s) 257, 352
SchI GAGTC 2 cut(s) 75, 235
ScrFI CCNGG 1 cut(s) 173
SetI ASST 4 cut(s) 165, 201, 210, 279
SfaNI GCATC 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 309
SinI GGWCC 1 cut(s) 257
Sse9I AATT 5 cut(s) 106, 117, 295, 305, 344
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 171
TaqI TCGA 1 cut(s) 309
TaqII GACCGA 1 cut(s) 245
TasI AATT 5 cut(s) 106, 117, 295, 305, 344
TfiI GAWTC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 5 cut(s) 106, 117, 295, 305, 344
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.