Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008911

Physical Location & Seq

Genomic Coordinates Forward (+)

70093837 .. 70095221

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG501300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCCCAAAATCGAGGTCATCAACTTCGATCAACAGCCCGGTGTTTCTCAGCAACCTATTTCCGCTCGACAATCTACTCGCTCTGTCAAAGCTATCCAAAGGTTTCGCTCAGAAGGAGAAGGTTTATAGACGAAGCTGTTTGGTTTAACAAGGCACAAAACTTGACGTATTTGGATTTGGGGCATTGCTTCCAAGGTGACGGCTTCCTTAAAGCATTTGGGGCGTCTCGCAACAGTTCCGATGTGGAAAACTGTTGGGGGATCACAGACGACAGTTTAGCACTTTTGGCAAATGGGGCTTCCTCAAAAACCCTCAAGAAATTGGTGCTTGCTTGCTGCTCAAGCATCACCGATTATGGGGTCTCTCTTTTGCAGGAAATGTGTTGCTTGGAAGAGCTGAATTTGGAAAGCTGTGGGGATAAAGTCACTAATGTAGGAGTTTTAGCAATCTCCGGAATTCAAACCCTCAAGAAATTGAACTTGAGTTGGCTGCGCAATGTCTCCGACCAAAGCATTAATTGTTGCTCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

8.49

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008911)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0307011
rosa_laevigata	RLG00000010742 RLG00000010743 RLG00000027492
rosa_multiflora	Rmu_sc0000294.1_g000037 Rmu_sc0005634.1_g000009 Rmu_sc0005634.1_g000010
rosa_roxburghii	Rroxscaffold_4G00292410 Rroxscaffold_7G00161230 Rroxscaffold_7G00161240
rosa_rugosa	Rorug06G0355200
rosa_samantha	Rh1BG285900 Rh1DG317400 Rh6BG433700 Rh6BG433800 Rh6BG434100 Rh6BG501300 Rh6CG481900 Rh6CG482200 Rh6CG482300 Rh6DG468200 Rh6DG468500
rosa_wichuraiana	Rw1G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	452
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	400, 456
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	461, 478
AluBI	AGCT	4 cut(s)	93, 137, 397, 411
AluI	AGCT	4 cut(s)	93, 137, 397, 411
Alw26I	GTCTC	3 cut(s)	231, 367, 505
AlwI	GGATC	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	452
ApeKI	GCWGC	2 cut(s)	336, 490
ApoI	RAATTY	2 cut(s)	400, 456
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	209, 340
BbvI	GCAGC	2 cut(s)	323, 477
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	231, 367, 505
BisI	GCNGC	2 cut(s)	337, 491
BlsI	GCNGC	2 cut(s)	338, 492
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	354
BpuEI	CTTGAG	4 cut(s)	299, 325, 452, 502
BpuMI	CCSGG	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse3DI	GCAATG	2 cut(s)	184, 502
BseAI	TCCGGA	1 cut(s)	452
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	2 cut(s)	184, 502
BseMII	CTCAG	2 cut(s)	63, 124
BseXI	GCAGC	2 cut(s)	323, 477
BsiSI	CCGG	2 cut(s)	40, 453
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	231, 367, 505
BsmBI	CGTCTC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	29, 261
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	2 cut(s)	62, 123
BspEI	TCCGGA	1 cut(s)	452
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	184, 502
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	29, 261
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	3 cut(s)	236, 254, 275
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	330, 334
BstDEI	CTNAG	2 cut(s)	49, 110
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	2 cut(s)	32, 264
BstMAI	GTCTC	3 cut(s)	231, 367, 505
BstMBI	GATC	2 cut(s)	29, 261
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 287, 296, 342
BstSCI	CCNGG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	323, 477
Cac8I	GCNNGC	2 cut(s)	330, 334
CfoI	GCGC	1 cut(s)	495
CseI	GACGC	1 cut(s)	213
CviJI	RGCY	9 cut(s)	38, 93, 137, 204, 299, 397, 411, 490, 531
CviKI_1	RGCY	9 cut(s)	38, 93, 137, 204, 299, 397, 411, 490, 531
DdeI	CTNAG	2 cut(s)	49, 110
DpnI	GATC	2 cut(s)	31, 263
DpnII	GATC	2 cut(s)	29, 261
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	231
FaiI	YATR	2 cut(s)	128, 357
Fnu4HI	GCNGC	2 cut(s)	337, 491
Fsp4HI	GCNGC	2 cut(s)	337, 491
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	337, 491
HapII	CCGG	2 cut(s)	40, 453
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	495
Hin1I	GRCGYC	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	40, 453
HphI	GGTGA	2 cut(s)	209, 340
Hpy188I	TCNGA	3 cut(s)	113, 241, 505
Hpy188III	TCNNGA	3 cut(s)	316, 453, 469
HpyAV	CCTTC	2 cut(s)	108, 114
HpyCH4III	ACNGT	3 cut(s)	236, 254, 275
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 287, 296, 342
HpyF3I	CTNAG	2 cut(s)	49, 110
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	224
HspAI	GCGC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	29, 261
LguI	GCTCTTC	1 cut(s)	387
LpnPI	CCDG	4 cut(s)	53, 359, 466, 513
Lsp1109I	GCAGC	2 cut(s)	323, 477
LweI	GCATC	1 cut(s)	354
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	197, 424
MalI	GATC	2 cut(s)	31, 263
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	2 cut(s)	29, 261
MboII	GAAGA	1 cut(s)	404
MluCI	AATT	5 cut(s)	320, 400, 456, 473, 517
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	4 cut(s)	8, 313, 323, 476
MroI	TCCGGA	1 cut(s)	452
MseI	TTAA	3 cut(s)	147, 210, 516
MspI	CCGG	2 cut(s)	40, 453
MspR9I	CCNGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	221, 287, 296, 342
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	29, 261
NmuCI	GTSAC	2 cut(s)	197, 424
NsbI	TGCGCA	1 cut(s)	494
PciSI	GCTCTTC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	338, 492
PshBI	ATTAAT	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	147, 210, 516
SatI	GCNGC	2 cut(s)	337, 491
Sau3AI	GATC	2 cut(s)	29, 261
ScrFI	CCNGG	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	354
SmlI	CTYRAG	4 cut(s)	314, 340, 467, 481
SmoI	CTYRAG	4 cut(s)	314, 340, 467, 481
Sse9I	AATT	5 cut(s)	320, 400, 456, 473, 517
SsiI	CCGC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	3 cut(s)	236, 254, 275
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	3 cut(s)	13, 28, 68
TasI	AATT	5 cut(s)	320, 400, 456, 473, 517
Tru1I	TTAA	3 cut(s)	147, 210, 516
Tru9I	TTAA	3 cut(s)	147, 210, 516
TseFI	GTSAC	2 cut(s)	197, 424
TseI	GCWGC	2 cut(s)	336, 490
Tsp45I	GTSAC	2 cut(s)	197, 424
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	400, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.