Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008911

Physical Location & Seq

Genomic Coordinates Forward (+)

4056986 .. 4057969

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCATGGCAAAAGAAGCTATGGAAAATTAAATTGTTTGCTGAGTGACGATGAAGTATGCCTAATCTTCAAAAGGTTAAGCGACCCAGATGATAGAAAATACTTCTCCAAAGTCTGCAAGCAATGGCTGAGAGTGGAGGGTCTAACCCGACCATCAATTCTTCTCCTCGGACCTGAATTTCTCAGTCAATTCCCCAATTTAGTCACATTCGAAACGTCCAAGGATATCAGCGAAACCGACCACAAATTCATAGCTGAAACCTGTCCCAATATCGAGATGATCAACCTTAATTCCAAAGGCCGTCTTGACATTGCAGACACAGGTTTATGTCCCAAATTGTCTCGGGTTTCGCCTAGAGGGAGAACATCGGTCCTTGCTTGGTGCTCTAAAATTACTGGTGTTGGGGTCTCGCGGTTGCAGAAGATGGATTGCTTGGAGGACCTGAATTTGGCTCACTTGTCATCAGATGTCACCGACATCGGAGGTGTGGCAATCTCGGGTTGTCAAACACTCAAGAGATTGAACTTCTTGGAGAGGCTTGATTTAAGTTGGTGTTCGGTGACTGGAGCTGGTATTCGTAAGTTTTCAAGTCATATGTGCTTAGAATCTCTTGTGTTGCGCTTATATGGTGAGTATCTCAATGCATGTGATGTGGAACATGTGATACTTGGATGCCCTTCACTAAAGTCTATTGTGGTCGACACAGTGAATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

239

Amino Acids

26.49

Weight (kDa)

7.49

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008911)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0307011
rosa_laevigata	RLG00000010742 RLG00000010743 RLG00000027492
rosa_multiflora	Rmu_sc0000294.1_g000037 Rmu_sc0005634.1_g000009 Rmu_sc0005634.1_g000010
rosa_roxburghii	Rroxscaffold_4G00292410 Rroxscaffold_7G00161230 Rroxscaffold_7G00161240
rosa_rugosa	Rorug06G0355200
rosa_samantha	Rh1BG285900 Rh1DG317400 Rh6BG433700 Rh6BG433800 Rh6BG434100 Rh6BG501300 Rh6CG481900 Rh6CG482200 Rh6CG482300 Rh6DG468200 Rh6DG468500
rosa_wichuraiana	Rw1G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	412
AcsI	RAATTY	3 cut(s)	176, 245, 445
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	70, 523, 588
AluBI	AGCT	3 cut(s)	18, 254, 569
AluI	AGCT	3 cut(s)	18, 254, 569
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	345, 412
Ama87I	CYCGRG	2 cut(s)	342, 496
AoxI	GGCC	1 cut(s)	298
ApoI	RAATTY	3 cut(s)	176, 245, 445
AspLEI	GCGC	1 cut(s)	621
AspS9I	GGNCC	3 cut(s)	170, 370, 439
AsuHPI	GGTGA	3 cut(s)	463, 571, 641
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	2 cut(s)	342, 496
AvaII	GGWCC	3 cut(s)	170, 370, 439
Bbv12I	GWGCWC	1 cut(s)	386
BccI	CCATC	2 cut(s)	160, 418
BceAI	ACGGC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	345, 412
BfaI	CTAG	1 cut(s)	354
Bme18I	GGWCC	3 cut(s)	170, 370, 439
BmeT110I	CYCGRG	2 cut(s)	342, 496
BmgT120I	GGNCC	3 cut(s)	170, 370, 439
BmsI	GCATC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	166, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	400, 568
Bse3DI	GCAATG	2 cut(s)	128, 309
BseDI	CCNNGG	2 cut(s)	166, 219
BseGI	GGATG	1 cut(s)	677
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	128, 309
BseMII	CTCAG	3 cut(s)	32, 119, 196
BseNI	ACTGG	2 cut(s)	400, 568
BseRI	GAGGAG	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	412
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	386
BsiHKCI	CYCGRG	2 cut(s)	342, 496
BslFI	GGGAC	2 cut(s)	249, 315
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	345, 412
BsmFI	GGGAC	2 cut(s)	249, 315
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	412
BsoBI	CYCGRG	2 cut(s)	342, 496
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	33, 120, 195
BspFNI	CGCG	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	2 cut(s)	128, 309
BsrI	ACTGG	2 cut(s)	400, 568
BssECI	CCNNGG	2 cut(s)	166, 219
BssMI	GATC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	706
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	5 cut(s)	41, 128, 182, 601, 714
BstF5I	GGATG	1 cut(s)	677
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	1 cut(s)	282
BstMAI	GTCTC	2 cut(s)	345, 412
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNSI	RCATGY	2 cut(s)	648, 662
BstUI	CGCG	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	677
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	621
Cfr13I	GGNCC	3 cut(s)	170, 370, 439
CviAII	CATG	3 cut(s)	5, 645, 659
CviJI	RGCY	7 cut(s)	18, 127, 254, 300, 452, 538, 569
CviKI_1	RGCY	7 cut(s)	18, 127, 254, 300, 452, 538, 569
DdeI	CTNAG	5 cut(s)	41, 128, 182, 601, 714
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	3 cut(s)	170, 370, 439
Eco88I	CYCGRG	2 cut(s)	342, 496
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	2 cut(s)	6, 646
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	8, 648, 662
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	2 cut(s)	249, 315
FatI	CATG	3 cut(s)	4, 644, 658
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	699
FokI	GGATG	1 cut(s)	684
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	3 cut(s)	8, 648, 662
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	1 cut(s)	605
HphI	GGTGA	3 cut(s)	463, 571, 641
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	3 cut(s)	170, 466, 482
Hpy188III	TCNNGA	3 cut(s)	274, 305, 514
Hpy8I	GTNNAC	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	687
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	5 cut(s)	4, 117, 314, 418, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	5 cut(s)	41, 128, 182, 601, 714
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	3 cut(s)	8, 648, 662
HspAI	GCGC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	8 cut(s)	99, 186, 274, 306, 381, 455, 549, 555
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	4 cut(s)	44, 202, 469, 559
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	58, 152, 433
MhlI	GDGCHC	1 cut(s)	386
MnlI	CCTC	6 cut(s)	130, 176, 350, 430, 476, 528
Mph1103I	ATGCAT	2 cut(s)	6, 646
MseI	TTAA	4 cut(s)	29, 77, 288, 545
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	8, 648, 662
NmuCI	GTSAC	4 cut(s)	44, 202, 469, 559
NsiI	ATGCAT	2 cut(s)	6, 646
NspI	RCATGY	2 cut(s)	648, 662
NspV	TTCGAA	1 cut(s)	210
PciI	ACATGT	1 cut(s)	658
PfeI	GAWTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	439
PscI	ACATGT	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	439
PspPI	GGNCC	3 cut(s)	170, 370, 439
PspPPI	RGGWCCY	1 cut(s)	439
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
SalI	GTCGAC	1 cut(s)	698
SaqAI	TTAA	4 cut(s)	29, 77, 288, 545
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	3 cut(s)	170, 370, 439
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	1 cut(s)	662
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	3 cut(s)	170, 370, 439
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	210, 273, 699
TaqII	GACCGA	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	605
Tru1I	TTAA	4 cut(s)	29, 77, 288, 545
Tru9I	TTAA	4 cut(s)	29, 77, 288, 545
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	4 cut(s)	44, 202, 469, 559
Tsp45I	GTSAC	4 cut(s)	44, 202, 469, 559
TspDTI	ATGAA	2 cut(s)	66, 238
TspRI	CASTG	1 cut(s)	711
VpaK11BI	GGWCC	3 cut(s)	170, 370, 439
XapI	RAATTY	3 cut(s)	176, 245, 445
XceI	RCATGY	2 cut(s)	648, 662
XmiI	GTMKAC	1 cut(s)	699
XspI	CTAG	1 cut(s)	354
Zsp2I	ATGCAT	2 cut(s)	6, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.