Rorug06G0355200

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008911
Physical Location & Seq
Reverse (-)
50273547 .. 50274053
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355200.1

Sequence Viewer

Length: 507 bp
ATGGGTTCTTTATCTCGTACAAACCCCACATCTCCGTTGACAGTGTTTCCCTTACTCATCATTCTCTCATCCTTTGCCTACTGCGACGTTGGCAAGCCATCAGCCTATGAAGTACTTCAACAATATGGCTTCCCAATTGGTATTCTTCCCATTGGAGTAACAGGCTACGAGTTGAACACAGAAACTGGCCAGTTCTCGGCCTATTTGAACGGAACTTGCAGCTTCTCTGTTGAAGATTCATATCAGCTCGAGTACAAGTCCACCATAACTGGTGTTTTGTCCAAAGACAGGCTCAAACATTTGAAGGGCGTCAGTGTCAAGGTGCTCTTCTTCTGGCTCAGCATTGTCGAAGTGGTTCATGACGGCGACGAGCTGCAGTTCTCTGTGGGGATTGCTTCGGCAAATTTTCCAGTCAGCAACTTCGAGGAGCGTCCTCAGTGTGGGTGTGGATTGGATTGTAACCAGTTTAGCACTGTCCTGCCTGCATATCCTGACAGTACTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

168

Amino Acids

18.39

Weight (kDa)

4.63

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 35 - 142 5.2e-37 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 4 cut(s) 19, 114, 254, 499
AfiI CCNNNNNNNGG 3 cut(s) 196, 288, 440
AgsI TTSAA 5 cut(s) 119, 175, 208, 233, 304
AluBI AGCT 3 cut(s) 222, 247, 373
AluI AGCT 3 cut(s) 222, 247, 373
Alw21I GWGCWC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 2 cut(s) 187, 198
ApeKI GCWGC 2 cut(s) 219, 373
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 2 cut(s) 114, 354
AvaI CYCGRG 1 cut(s) 248
BalI TGGCCA 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 231, 360
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 379
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 220, 374
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 2 cut(s) 221, 375
BmcAI AGTACT 2 cut(s) 114, 499
BmeT110I CYCGRG 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 309
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 288, 440
Bse1I ACTGG 5 cut(s) 190, 190, 274, 410, 463
Bse8I GATNNNNATC 1 cut(s) 240
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 196, 288, 440
BseMII CTCAG 2 cut(s) 352, 449
BseNI ACTGG 5 cut(s) 190, 190, 274, 410, 463
BseRI GAGGAG 1 cut(s) 440
BseXI GCAGC 2 cut(s) 231, 360
BshFI GGCC 2 cut(s) 189, 200
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 196, 288, 440
BsnI GGCC 2 cut(s) 189, 200
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 327
Bsp1720I GCTNAGC 1 cut(s) 338
BspANI GGCC 2 cut(s) 189, 200
BspCNI CTCAG 2 cut(s) 351, 448
BspHI TCATGA 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 332
BsrI ACTGG 5 cut(s) 190, 190, 274, 410, 463
BssNI GRCGYC 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 43, 475, 497
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 95, 483
BstDEI CTNAG 2 cut(s) 338, 435
BstF5I GGATG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 231, 360
BsuRI GGCC 2 cut(s) 189, 200
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 4 cut(s) 48, 319, 443, 471
Cac8I GCNNGC 2 cut(s) 95, 483
CaiI CAGNNNCTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 358
CseI GACGC 2 cut(s) 298, 419
Csp6I GTAC 4 cut(s) 18, 113, 253, 498
CviAII CATG 1 cut(s) 359
CviQI GTAC 4 cut(s) 18, 113, 253, 498
DdeI CTNAG 2 cut(s) 338, 435
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 248
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 108, 126, 241, 266, 360, 487
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 220, 374
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 220, 374
GluI GCNGC 2 cut(s) 220, 374
HaeIII GGCC 2 cut(s) 189, 200
HgaI GACGC 2 cut(s) 298, 419
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 362
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 39, 261
Hpy188III TCNNGA 2 cut(s) 359, 491
Hpy8I GTNNAC 2 cut(s) 39, 261
Hpy99I CGWCG 2 cut(s) 89, 371
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 43, 475, 497
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 219, 376, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 338, 435
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 362
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 2 cut(s) 231, 360
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 157, 458
MboII GAAGA 4 cut(s) 137, 245, 319, 322
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 2 cut(s) 135, 403
MluNI TGGCCA 1 cut(s) 189
MnlI CCTC 2 cut(s) 418, 444
Mox20I TGGCCA 1 cut(s) 189
MroXI GAANNNNTTC 2 cut(s) 114, 354
MscI TGGCCA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 189
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 90
NlaIII CATG 1 cut(s) 362
NmeAIII GCCGAG 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 332
PdmI GAANNNNTTC 2 cut(s) 114, 354
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 221, 375
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 378
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 4 cut(s) 19, 114, 254, 499
RsaNI GTAC 4 cut(s) 18, 113, 253, 498
SapI GCTCTTC 1 cut(s) 332
SatI GCNGC 2 cut(s) 220, 374
ScaI AGTACT 2 cut(s) 114, 499
SduI GDGCHC 1 cut(s) 327
SetI ASST 5 cut(s) 90, 224, 249, 324, 375
SfcI CTRYAG 1 cut(s) 374
Sfr274I CTCGAG 1 cut(s) 248
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 135, 403
TaaI ACNGT 3 cut(s) 43, 475, 497
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 249, 348, 423
TasI AATT 2 cut(s) 135, 403
TatI WGTACW 3 cut(s) 112, 252, 497
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 4 cut(s) 48, 319, 443, 478
TseI GCWGC 2 cut(s) 219, 373
TspDTI ATGAA 3 cut(s) 123, 228, 347
TspGWI ACGGA 2 cut(s) 24, 225
TspRI CASTG 4 cut(s) 48, 319, 443, 478
XapI RAATTY 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 248
XmnI GAANNNNTTC 2 cut(s) 114, 354
ZrmI AGTACT 2 cut(s) 114, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.