Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008911

Physical Location & Seq

Genomic Coordinates Forward (+)

56338486 .. 56339282

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATAGAAAACCATTCTCCGAGGTCTGCAAGCAATGGTGGAGATCGAGTGGAGGGTCTAAACCAAGCATCCATTCGTCTTCCCCAACTCGATTATCTCCGGCGTGTACTTCCCAGATTCCCAAACCTAGTCACATTTGAAACATCCAAATGTATCACCCGAAATAACATCGAGTTCTTGGCCCAAACATGTCCCAAAATCGAGGCCATCGACCTTGGAAAACCCAGAGATGATGCAACAGTAGAACCTAGGTATTCTGGGATCGAAGTTCTGTATGCTTTGGCACATAGCTGCCCAAAATTGTCCAAGGATTCTCTGAGAAGGAGAGACTACACTATTACCCCACTCATAAAAGCACAAAATAAGTTGAGGCATTTGGTTTTGGGTTATTGCTGTGTGTTAGATGAAACTCTTGAAGCGATTGGGTCGTTCAGTTGTCTTAGCTATTTGAATCTGGAGTGGTTTTCGCGCAATGGGTCTTGCTCGAAAATCCTTAAAACATTGGTGCTTGCTTGGTGCAGCAGAATCACCGATTTTGGGGCCTGTCTTTTGCAGAATATGTCTTGCTTGGAAGAGCTGGATTTGGATGAGGTGAACAGGATCAGTAGTGATGATGGACTCATAGCAGTCTCGGAAATTCGAACACTCAAGAAACTGAACTTGGGTTGGATTAATGGGTCGGTGGACGCCCTTTATTCATATAGAGAGGCATATGGTTGTGAAGGGTATCGAGTGGGTGATATATCTTTGGAGTTTCGAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

6.34

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008911)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0307011
rosa_laevigata	RLG00000010742 RLG00000010743 RLG00000027492
rosa_multiflora	Rmu_sc0000294.1_g000037 Rmu_sc0005634.1_g000009 Rmu_sc0005634.1_g000010
rosa_roxburghii	Rroxscaffold_4G00292410 Rroxscaffold_7G00161230 Rroxscaffold_7G00161240
rosa_rugosa	Rorug06G0355200
rosa_samantha	Rh1BG285900 Rh1DG317400 Rh6BG433700 Rh6BG433800 Rh6BG434100 Rh6BG501300 Rh6CG481900 Rh6CG482200 Rh6CG482300 Rh6DG468200 Rh6DG468500
rosa_wichuraiana	Rw1G028650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	469
AclWI	GGATC	2 cut(s)	269, 608
AcsI	RAATTY	1 cut(s)	636
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	140, 416, 451
AjuI	GAANNNNNNNTTGG	4 cut(s)	57, 89, 644, 676
AluBI	AGCT	3 cut(s)	291, 444, 577
AluI	AGCT	3 cut(s)	291, 444, 577
Alw26I	GTCTC	2 cut(s)	321, 634
AlwI	GGATC	2 cut(s)	269, 608
AoxI	GGCC	3 cut(s)	180, 204, 540
ApeKI	GCWGC	2 cut(s)	291, 519
ApoI	RAATTY	1 cut(s)	636
AseI	ATTAAT	1 cut(s)	672
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	181, 540
AsuHPI	GGTGA	4 cut(s)	148, 520, 604, 749
AsuII	TTCGAA	2 cut(s)	640, 757
AvrII	CCTAGG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	278, 531
BccI	CCATC	2 cut(s)	215, 608
BcoDI	GTCTC	2 cut(s)	321, 634
BfaI	CTAG	2 cut(s)	128, 249
BisI	GCNGC	2 cut(s)	292, 520
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	293, 521
BmgT120I	GGNCC	2 cut(s)	181, 540
BmiI	GGNNCC	1 cut(s)	541
BmsI	GCATC	2 cut(s)	77, 223
BpiI	GAAGAC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	476
Bpu14I	TTCGAA	2 cut(s)	640, 757
BpuEI	CTTGAG	1 cut(s)	632
BsaHI	GRCGYC	1 cut(s)	687
BsaJI	CCNNGG	4 cut(s)	20, 214, 248, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse3DI	GCAATG	2 cut(s)	40, 478
BseDI	CCNNGG	4 cut(s)	20, 214, 248, 306
BseGI	GGATG	3 cut(s)	68, 143, 592
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMI	GCAATG	2 cut(s)	40, 478
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	278, 531
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	182, 206, 542
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	2 cut(s)	321, 634
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	182, 206, 542
Bsp119I	TTCGAA	2 cut(s)	640, 757
Bsp143I	GATC	3 cut(s)	43, 261, 600
BspANI	GGCC	3 cut(s)	182, 206, 542
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	269, 608
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	2 cut(s)	640, 757
BsrDI	GCAATG	2 cut(s)	40, 478
BssECI	CCNNGG	4 cut(s)	20, 214, 248, 306
BssMI	GATC	3 cut(s)	43, 261, 600
BssNI	GRCGYC	1 cut(s)	687
BssT1I	CCWWGG	3 cut(s)	214, 248, 306
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	567
BstACI	GRCGYC	1 cut(s)	687
BstBI	TTCGAA	2 cut(s)	640, 757
BstC8I	GCNNGC	2 cut(s)	31, 510
BstDEI	CTNAG	2 cut(s)	317, 440
BstF5I	GGATG	3 cut(s)	68, 143, 592
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	3 cut(s)	46, 264, 603
BstMAI	GTCTC	2 cut(s)	321, 634
BstMBI	GATC	3 cut(s)	43, 261, 600
BstNSI	RCATGY	1 cut(s)	192
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	278, 531
BstV2I	GAAGAC	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	182, 206, 542
BtsCI	GGATG	3 cut(s)	68, 143, 592
Cac8I	GCNNGC	2 cut(s)	31, 510
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	181, 540
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	6 cut(s)	182, 206, 291, 444, 542, 577
CviKI_1	RGCY	6 cut(s)	182, 206, 291, 444, 542, 577
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	317, 440
DpnI	GATC	3 cut(s)	45, 263, 602
DpnII	GATC	3 cut(s)	43, 261, 600
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	3 cut(s)	214, 248, 306
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT14I	CCWWGG	3 cut(s)	214, 248, 306
ErhI	CCWWGG	3 cut(s)	214, 248, 306
FaeI	CATG	1 cut(s)	192
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	188
FauNDI	CATATG	2 cut(s)	712, 764
Fnu4HI	GCNGC	2 cut(s)	292, 520
FokI	GGATG	3 cut(s)	55, 130, 599
Fsp4HI	GCNGC	2 cut(s)	292, 520
FspBI	CTAG	2 cut(s)	128, 249
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	2 cut(s)	292, 520
GsuI	CTGGAG	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	182, 206, 542
HapII	CCGG	1 cut(s)	100
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	5 cut(s)	117, 311, 451, 525, 618
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	4 cut(s)	148, 520, 604, 749
Hpy166II	GTNNAC	3 cut(s)	107, 595, 685
Hpy188I	TCNGA	3 cut(s)	21, 318, 634
Hpy188III	TCNNGA	3 cut(s)	413, 455, 649
Hpy8I	GTNNAC	3 cut(s)	107, 595, 685
HpyAV	CCTTC	2 cut(s)	315, 716
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	29, 236, 519, 553
HpyF3I	CTNAG	2 cut(s)	317, 440
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	1 cut(s)	192
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	43, 261, 600
LguI	GCTCTTC	1 cut(s)	567
LpnPI	CCDG	8 cut(s)	113, 127, 238, 243, 440, 556, 563, 583
Lsp1109I	GCAGC	2 cut(s)	278, 531
LweI	GCATC	2 cut(s)	77, 223
MaeI	CTAG	2 cut(s)	128, 249
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	3 cut(s)	45, 263, 602
MboI	GATC	3 cut(s)	43, 261, 600
MboII	GAAGA	2 cut(s)	71, 584
MluCI	AATT	2 cut(s)	299, 636
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	6 cut(s)	15, 46, 196, 363, 583, 700
MseI	TTAA	2 cut(s)	495, 672
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	469
NdeI	CATATG	2 cut(s)	712, 764
NdeII	GATC	3 cut(s)	43, 261, 600
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	192
NspV	TTCGAA	2 cut(s)	640, 757
PciI	ACATGT	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	117, 311, 451, 525
PkrI	GCNGC	2 cut(s)	293, 521
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PscI	ACATGT	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	181, 540
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	495, 672
SatI	GCNGC	2 cut(s)	292, 520
Sau3AI	GATC	3 cut(s)	43, 261, 600
Sau96I	GGNCC	2 cut(s)	181, 540
SchI	GAGTC	1 cut(s)	612
SetI	ASST	9 cut(s)	26, 129, 216, 250, 254, 293, 446, 579, 594
SfaNI	GCATC	2 cut(s)	77, 223
SfuI	TTCGAA	2 cut(s)	640, 757
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	2 cut(s)	299, 636
SspMI	CTAG	2 cut(s)	128, 249
StyI	CCWWGG	3 cut(s)	214, 248, 306
TaaI	ACNGT	1 cut(s)	241
TasI	AATT	2 cut(s)	299, 636
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	117, 311, 451, 525
Tru1I	TTAA	2 cut(s)	495, 672
Tru9I	TTAA	2 cut(s)	495, 672
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	291, 519
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	420, 687
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	1 cut(s)	636
XceI	RCATGY	1 cut(s)	192
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	128, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.