Rh1DG317400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008911
Physical Location & Seq
Forward (+)
54360913 .. 54361332
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG317400.1

Sequence Viewer

Length: 420 bp
ATGACCAACTCAGATGATAGAAAACCGTTCTCCGAGGTCTGCAAGCAATGGTGGAGAGTGGAGGGTCTAAACCAAACATCCATTCGTCTTCCCCAACTCGATTATCTCCGGCGTGTACTTCCCAGATTCCCAAACCTAGTCACATTTGAAACATCCAAATGTATCACTCGGAATAACATCGAGTTCTTGGCCCAAACATGTCCCAAAATCGAGGCCATCGACCTTGGAAAACCCAGAGATGATGTAACAGTAGAACCTAGGTATTCTGGGATCGAAGTTCTGTACGCTTTGGCACATAGCTGCCCAAAATTGTCCAAGGCCGGATTCTCTGAGAAGGAGAGACTACACTATTACTCCACTCTTAAAAGCACAAAACAAGTTGAGGCATTTGGATTTGGGTTATTGCTGTGTGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

139

Amino Acids

16.06

Weight (kDa)

9.02

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 278
AfaI GTAC 2 cut(s) 117, 284
AflIII ACRYGT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 149
AjuI GAANNNNNNNTTGG 4 cut(s) 66, 98, 308, 340
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 1 cut(s) 278
AoxI GGCC 3 cut(s) 189, 213, 318
ApeKI GCWGC 1 cut(s) 300
AspA2I CCTAGG 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 190
AvrII CCTAGG 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 287
BccI CCATC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 137, 258
BisI GCNGC 1 cut(s) 301
BlnI CCTAGG 1 cut(s) 257
BlsI GCNGC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 33, 223, 257, 315
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bse3DI GCAATG 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 33, 223, 257, 315
BseGI GGATG 2 cut(s) 77, 152
BseMI GCAATG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 24, 321
BseXI GCAGC 1 cut(s) 287
BshFI GGCC 3 cut(s) 191, 215, 320
BsiSI CCGG 2 cut(s) 109, 321
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 3 cut(s) 191, 215, 320
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 3 cut(s) 191, 215, 320
BspCNI CTCAG 2 cut(s) 23, 322
BspPI GGATC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 53
BssECI CCNNGG 4 cut(s) 33, 223, 257, 315
BssMI GATC 1 cut(s) 270
BssT1I CCWWGG 3 cut(s) 223, 257, 315
Bst4CI ACNGT 2 cut(s) 27, 250
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 10, 330
BstF5I GGATG 2 cut(s) 77, 152
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 3 cut(s) 191, 215, 320
BtsCI GGATG 2 cut(s) 77, 152
Cac8I GCNNGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 116, 283
CviAII CATG 1 cut(s) 198
CviJI RGCY 4 cut(s) 191, 215, 300, 320
CviKI_1 RGCY 4 cut(s) 191, 215, 300, 320
CviQI GTAC 2 cut(s) 116, 283
DdeI CTNAG 2 cut(s) 10, 330
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
Eco130I CCWWGG 3 cut(s) 223, 257, 315
EcoT14I CCWWGG 3 cut(s) 223, 257, 315
ErhI CCWWGG 3 cut(s) 223, 257, 315
FaeI CATG 1 cut(s) 201
FaiI YATR 2 cut(s) 199, 297
FaqI GGGAC 1 cut(s) 186
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 64, 139
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 137, 258
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 3 cut(s) 191, 215, 320
HapII CCGG 2 cut(s) 109, 321
Hin1II CATG 1 cut(s) 201
HinfI GANTC 2 cut(s) 126, 324
HpaII CCGG 2 cut(s) 109, 321
Hpy166II GTNNAC 1 cut(s) 116
Hpy188I TCNGA 4 cut(s) 13, 34, 171, 331
Hpy8I GTNNAC 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 27, 250
HpyCH4V TGCA 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 10, 330
Hsp92II CATG 1 cut(s) 201
Kzo9I GATC 1 cut(s) 270
LpnPI CCDG 5 cut(s) 122, 136, 247, 252, 334
Lsp1109I GCAGC 1 cut(s) 287
MaeI CTAG 2 cut(s) 137, 258
MaeIII GTNAC 2 cut(s) 139, 244
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 1 cut(s) 80
MluCI AATT 1 cut(s) 308
MnlI CCTC 4 cut(s) 28, 55, 205, 376
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 2 cut(s) 109, 321
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 139
NspI RCATGY 1 cut(s) 201
PciI ACATGT 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 2 cut(s) 126, 324
PkrI GCNGC 1 cut(s) 302
PscI ACATGT 1 cut(s) 197
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 2 cut(s) 117, 284
RsaNI GTAC 2 cut(s) 116, 283
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 190
SetI ASST 6 cut(s) 39, 138, 225, 259, 263, 302
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 137, 258
StyI CCWWGG 3 cut(s) 223, 257, 315
TaaI ACNGT 2 cut(s) 27, 250
TaqI TCGA 5 cut(s) 99, 180, 210, 219, 273
TasI AATT 1 cut(s) 308
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 2 cut(s) 126, 324
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 139
XceI RCATGY 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 257
XspI CTAG 2 cut(s) 137, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.