Rh6BG433700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008911
Physical Location & Seq
Forward (+)
65398053 .. 65398439
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG433700.1

Sequence Viewer

Length: 387 bp
ATGCATGGCAAAAGAAGAACTATGGAAAATTGTTTGCCGAGTGACGATGAAGTAGGCCTAATCTTAGAAAGGTTAAGCGACCCAGATGATAGAAAATCCTTCTCCAAAGTCTGCAAGCAATGGCTGAGAGTGGAGGGTCTAACCCGACCATCAATTCTTCTCCTCGGACCTGAATTTCTCAGTCAATTCCCCAATTTAGTCACATTCGAAACGTCCAAGGATATCAGCGAAACCTGTCCCAATATCGAGGTGATCAACCTTAATTCCAAAGGCCGTCTTGACATTGCAGACAAAGGTTTATGCGCTTTGGCAAGAGGGTGTCCCAAATTGTCTCGGGTTTCGCCTAGAGGGAGAGTTTTTTTAACATGTTTCGTTTATAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

128

Amino Acids

14.44

Weight (kDa)

8.82

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 17 - 49 5.3e-08 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AcsI RAATTY 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 2 cut(s) 55, 271
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 262
AsuII TTCGAA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 167
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 258
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 163, 216
Bse3DI GCAATG 2 cut(s) 125, 282
BseDI CCNNGG 2 cut(s) 163, 216
BseMI GCAATG 2 cut(s) 125, 282
BseMII CTCAG 2 cut(s) 116, 193
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 2 cut(s) 57, 273
BsiHKCI CYCGRG 1 cut(s) 333
BslFI GGGAC 2 cut(s) 222, 306
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 222, 306
BsnI GGCC 2 cut(s) 57, 273
BsoBI CYCGRG 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 252
BspANI GGCC 2 cut(s) 57, 273
BspCNI CTCAG 2 cut(s) 117, 192
BspT104I TTCGAA 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 125, 282
BssECI CCNNGG 2 cut(s) 163, 216
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 64, 125, 179
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 369
BsuRI GGCC 2 cut(s) 57, 273
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 2 cut(s) 5, 366
CviJI RGCY 3 cut(s) 57, 124, 273
CviKI_1 RGCY 3 cut(s) 57, 124, 273
DdeI CTNAG 3 cut(s) 64, 125, 179
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 57
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 333
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 8, 369
FaiI YATR 5 cut(s) 6, 23, 301, 367, 378
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 222, 306
FatI CATG 2 cut(s) 4, 365
FbaI TGATCA 1 cut(s) 252
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 57, 273
HhaI GCGC 1 cut(s) 305
Hin1II CATG 2 cut(s) 8, 369
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 4, 114, 287
HpyF3I CTNAG 3 cut(s) 64, 125, 179
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 8, 369
HspAI GCGC 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 96, 183, 247
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 41, 199
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 27, 149
MluCI AATT 7 cut(s) 28, 153, 173, 185, 193, 262, 326
MnlI CCTC 5 cut(s) 127, 173, 241, 308, 341
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 74, 261, 362
NdeII GATC 1 cut(s) 252
NlaIII CATG 2 cut(s) 8, 369
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 41, 199
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 369
NspV TTCGAA 1 cut(s) 207
PceI AGGCCT 1 cut(s) 57
PciI ACATGT 1 cut(s) 365
PscI ACATGT 1 cut(s) 365
PsiI TTATAA 1 cut(s) 378
PspPI GGNCC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 74, 261, 362
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 167
SetI ASST 7 cut(s) 74, 172, 215, 236, 252, 261, 298
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 167
Sse9I AATT 7 cut(s) 28, 153, 173, 185, 193, 262, 326
SseBI AGGCCT 1 cut(s) 57
SspMI CTAG 1 cut(s) 345
StuI AGGCCT 1 cut(s) 57
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 207, 246
TasI AATT 7 cut(s) 28, 153, 173, 185, 193, 262, 326
Tru1I TTAA 3 cut(s) 74, 261, 362
Tru9I TTAA 3 cut(s) 74, 261, 362
TseFI GTSAC 2 cut(s) 41, 199
Tsp45I GTSAC 2 cut(s) 41, 199
TspDTI ATGAA 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 369
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.