RchiOBHm_Chr7g0205951

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007537
Physical Location & Seq
Reverse (-)
23648890 .. 23649342
453 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18429

Sequence Viewer

Length: 318 bp
ATGAAAAGCTCCCCTGCACTGCAAGAACTAGAACTCGTGTCCATCCGAGACGATGAGGCTGTTGCAGGAGAAGTGAACTCTTGGTTAGATGACAATCGGAGTTGTCAATTCTCCCAACTGTGGCTTGTTAAAATATTTGGCCTCAGGGGTGTCATTGCTGAACTAGAGTTCATCAGATTTGTGCTCTTAAGGTCACCCATACTTGAGTCAATGACTGTAAAACCTCGTTCTGACAAAGGTTCTTCGGAACTATTTAAAAAGTGGCTTCGGTTTAAGCGTGTCTCCGTGGATGCAGAGATAATCTACTTGGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

105

Amino Acids

12.1

Weight (kDa)

5.48

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 120
AflII CTTAAG 1 cut(s) 187
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 2 cut(s) 42, 286
AlwI GGATC 1 cut(s) 305
AoxI GGCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 143
BamHI GGATCC 1 cut(s) 310
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 42, 286
BfaI CTAG 2 cut(s) 29, 164
BfrI CTTAAG 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 312
BmsI GCATC 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 42, 295
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 157
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 2 cut(s) 42, 286
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 305
BspTI CTTAAG 1 cut(s) 187
BsrDI GCAATG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 120, 217
BstAFI CTTAAG 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 285
BstEII GGTNACC 1 cut(s) 192
BstF5I GGATG 2 cut(s) 42, 295
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 42, 286
BstMBI GATC 1 cut(s) 310
BstPI GGTNACC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 285
BtsCI GGATG 2 cut(s) 42, 295
BtsI GCAGTG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 17
CviAII CATG 1 cut(s) 315
CviJI RGCY 5 cut(s) 9, 59, 124, 141, 265
CviKI_1 RGCY 5 cut(s) 9, 59, 124, 141, 265
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraI TTTAAA 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 192
EcoO65I GGTNACC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 318
FaiI YATR 2 cut(s) 200, 316
FatI CATG 1 cut(s) 314
FokI GGATG 2 cut(s) 29, 302
FspBI CTAG 2 cut(s) 29, 164
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 1 cut(s) 318
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 47, 99, 176, 232, 247
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 120, 217
HpyCH4V TGCA 4 cut(s) 17, 22, 65, 293
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 1 cut(s) 318
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 3 cut(s) 27, 51, 130
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 29, 164
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 234
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 49, 152, 234
MseI TTAA 4 cut(s) 129, 188, 255, 273
MspCI CTTAAG 1 cut(s) 187
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 318
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 274
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 4 cut(s) 129, 188, 255, 273
Sau3AI GATC 1 cut(s) 310
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 11, 194, 226, 241
SfaNI GCATC 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 187, 203
SmoI CTYRAG 2 cut(s) 187, 203
Sse9I AATT 1 cut(s) 107
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 29, 164
TaaI ACNGT 2 cut(s) 120, 217
TasI AATT 1 cut(s) 107
Tru1I TTAA 4 cut(s) 129, 188, 255, 273
Tru9I TTAA 4 cut(s) 129, 188, 255, 273
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 2 cut(s) 17, 160
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 187
XspI CTAG 2 cut(s) 29, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.