Rh6AG049700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0007537
Physical Location & Seq
Reverse (-)
7210010 .. 7210351
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG049700.1

Sequence Viewer

Length: 342 bp
ATGCTTAGGGCGTCTCTCTCCACCGAACGCCAAGTCGTTTTTCCGTGGGCCGAGCTGGCAACCAGCAACCTTGGGTCAGTTTTTGGGTCAAGAATTTTGACCTCCCAAGTGACCTGGGTCACCTTATGTCAATTCTTGACCGGCTTCTCTTTTGTGGGTGGAAGCAGAAACTGGCTTGGGCTTGTTGATGTGGAGACCGGGCCAGAAGGCACCGGTGGACACTCTCCAAGAAAAAGGCAGAGCACAAACACTCTCCAAGGAGAAGAAGAACAGTCGAAGGTCGATTTTGAGACAGAGCTAGATCTCGACGAAGCTCCAGGTCGTCGCTTAGGTATGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

4.91

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 212
AjnI CCWGG 2 cut(s) 113, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 55, 298, 314
AluI AGCT 3 cut(s) 55, 298, 314
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 18, 188, 284
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 2 cut(s) 48, 200
ApoI RAATTY 1 cut(s) 93
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AsiGI ACCGGT 1 cut(s) 212
AspS9I GGNCC 2 cut(s) 48, 200
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 112
BanI GGYRCC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 115, 318
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 18, 188, 284
BfaI CTAG 1 cut(s) 299
BglI GCCNNNNNGGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 301
Bme1390I CCNGG 3 cut(s) 115, 199, 318
BmgT120I GGNCC 2 cut(s) 48, 200
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 115, 199, 318
BoxI GACNNNNGTC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 5, 328
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 4 cut(s) 44, 70, 114, 256
BsaWI WCCGGW 1 cut(s) 212
Bse118I RCCGGY 2 cut(s) 140, 212
Bse1I ACTGG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 115, 318
BseDI CCNNGG 4 cut(s) 44, 70, 114, 256
BseNI ACTGG 1 cut(s) 176
BshFI GGCC 2 cut(s) 50, 202
BshNI GGYRCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 141, 198, 213
BsmAI GTCTC 3 cut(s) 18, 188, 284
BsmBI CGTCTC 1 cut(s) 18
BsnI GGCC 2 cut(s) 50, 202
Bso31I GGTCTC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 301
BspANI GGCC 2 cut(s) 50, 202
BspLI GGNNCC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 2 cut(s) 140, 212
BsrI ACTGG 1 cut(s) 176
BssAI RCCGGY 2 cut(s) 140, 212
BssECI CCNNGG 4 cut(s) 44, 70, 114, 256
BssMI GATC 1 cut(s) 301
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 70, 256
Bst2UI CCWGG 2 cut(s) 115, 318
Bst4CI ACNGT 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 5, 328
BstDSI CCRYGG 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 118
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 3 cut(s) 18, 188, 284
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 2 cut(s) 115, 318
BstPAI GACNNNNGTC 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 113, 197, 316
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 2 cut(s) 50, 202
BtgI CCRYGG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 140, 212
Cfr13I GGNCC 2 cut(s) 48, 200
CspAI ACCGGT 1 cut(s) 212
CviJI RGCY 8 cut(s) 50, 55, 144, 175, 181, 202, 298, 314
CviKI_1 RGCY 8 cut(s) 50, 55, 144, 175, 181, 202, 298, 314
DdeI CTNAG 2 cut(s) 5, 328
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 70, 256
Eco31I GGTCTC 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 113, 316
EcoT14I CCWWGG 2 cut(s) 70, 256
ErhI CCWWGG 2 cut(s) 70, 256
Esp3I CGTCTC 1 cut(s) 18
FaiI YATR 2 cut(s) 127, 335
FspBI CTAG 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 2 cut(s) 50, 202
HapII CCGG 3 cut(s) 141, 198, 213
Hin1I GRCGYC 1 cut(s) 11
HpaII CCGG 3 cut(s) 141, 198, 213
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 218
Hpy188III TCNNGA 3 cut(s) 90, 136, 305
Hpy8I GTNNAC 1 cut(s) 218
Hpy99I CGWCG 2 cut(s) 311, 327
HpyAV CCTTC 2 cut(s) 200, 271
HpyCH4III ACNGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 5, 328
Hsp92I GRCGYC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 319
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 2 cut(s) 109, 118
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 2 cut(s) 275, 278
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 93, 131
MnlI CCTC 1 cut(s) 112
MspI CCGG 3 cut(s) 141, 198, 213
MspR9I CCNGG 3 cut(s) 115, 199, 318
MvaI CCWGG 2 cut(s) 115, 318
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 199
NdeII GATC 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 109, 118
PinAI ACCGGT 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 113, 316
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 113, 316
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 48, 200
PstNI CAGNNNCTG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 301
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 2 cut(s) 48, 200
ScrFI CCNGG 3 cut(s) 115, 199, 318
SduI GDGCHC 1 cut(s) 245
SgrAI CRCCGGYG 1 cut(s) 212
Sse9I AATT 2 cut(s) 93, 131
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 113, 197, 316
StyI CCWWGG 2 cut(s) 70, 256
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 275, 282, 306
TasI AATT 2 cut(s) 93, 131
TseFI GTSAC 2 cut(s) 109, 118
Tsp45I GTSAC 2 cut(s) 109, 118
TspGWI ACGGA 1 cut(s) 33
XapI RAATTY 1 cut(s) 93
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.