Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007537

Physical Location & Seq

Genomic Coordinates Reverse (-)

4043944 .. 4048495

Gene Structure 4552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCGGGAGTATTATCGACTCCTTATTTCTGGACCCAAGTGAGTACACGCGCCTTGCTTAGTGCGTCTCACTCAACCGAACGCCATGACGTCAGCCACGTTATCCCTTGGGCCGGGCTGGCAACCAGCAATGTGACCTGGGTCACCTTTCTTGACCGGCCCCTGTTTTTGTGGGTGGAAGCCGAAAATGGCTTGGGCTTGCTGATGTTGGACACCGGGCTAGAAGGCACCGGTGAAGAAGGCAAAGCATCATACAAAGATTACAATCACAGGAGAAGAAGAATAGTCGAAGGGTCACGCTGCTATGGGCCGGGAGAAGTGAAATCTTGTTTATATGACAACTACAATTGCACATACACTCAATTGCGGCTTGTGAAAATAACCAAGATCTCCTGTGTAAAAGCTCAACTAGATTTCATCAAATTTCTGCTTCTAAGTTCACCTGTGCTTGAGAAAATTACTGTTCAACCTGCTTCTGTAGATGGTTTTTCAAAGCTATTAAAAGATTTACTTCTGTTTAAGCGCGACTCAAAGCGTGCAGAGATAATGGTTTTGGACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

187

Amino Acids

21.09

Weight (kDa)

8.64

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007537)

Species	Orthologous Gene IDs
malus_domestica	MD05G1157400.v1.1
rosa_chinensis	RchiOBHm_Chr7g0205951
rosa_laevigata	RLG00000012688
rosa_multiflora	Rmu_sc0004084.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383120
rosa_samantha	Rh2BG210200 Rh3BG070100 Rh6AG049700 Rh6CG041600 Rh6CG041700 Rh6CG041800 Rh6CG041900 Rh6CG042000 Rh6CG042100 Rh6CG042200 Rh6CG042500 Rh6CG042600 Rh6CG042900 Rh6CG043100 Rh6CG043200 Rh6CG147400 Rh6CG422400 Rh6DG038000 Rh7CG240000 Rh7DG232200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	227
AccII	CGCG	2 cut(s)	51, 525
AciI	CCGC	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	467, 492
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	404, 496
AluI	AGCT	2 cut(s)	404, 496
Alw26I	GTCTC	1 cut(s)	72
AoxI	GGCC	3 cut(s)	111, 158, 308
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	422
AsiGI	ACCGGT	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	53, 525
AspS9I	GGNCC	5 cut(s)	33, 111, 159, 308, 556
AsuC2I	CCSGG	3 cut(s)	115, 217, 312
AsuHPI	GGTGA	3 cut(s)	136, 245, 432
AvaII	GGWCC	2 cut(s)	33, 556
BanI	GGYRCC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	476
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	3 cut(s)	115, 217, 312
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	221, 410
BfmI	CTRYAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	478
BglI	GCCNNNNNGGC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	301, 368
BlsI	GCNGC	2 cut(s)	302, 369
Bme1390I	CCNGG	4 cut(s)	115, 139, 217, 312
Bme18I	GGWCC	2 cut(s)	33, 556
BmgT120I	GGNCC	5 cut(s)	33, 111, 159, 308, 556
BmiI	GGNNCC	4 cut(s)	35, 161, 229, 558
BmrFI	CCNGG	4 cut(s)	115, 139, 217, 312
BmsI	GCATC	1 cut(s)	257
BoxI	GACNNNNGTC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	3 cut(s)	115, 217, 312
BsaBI	GATNNNNATC	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	107, 138
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	2 cut(s)	156, 230
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	107, 138
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	558
Bsh1236I	CGCG	2 cut(s)	51, 525
BshFI	GGCC	3 cut(s)	113, 160, 310
BshNI	GGYRCC	1 cut(s)	227
BshTI	ACCGGT	1 cut(s)	230
BsiSI	CCGG	5 cut(s)	114, 157, 216, 231, 311
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	113, 160, 310
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	113, 160, 310
BspFNI	CGCG	2 cut(s)	51, 525
BspLI	GGNNCC	4 cut(s)	35, 161, 229, 558
BspMI	ACCTGC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	2 cut(s)	156, 230
BssAI	RCCGGY	2 cut(s)	156, 230
BssECI	CCNNGG	2 cut(s)	107, 138
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	463
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	120, 200, 537
BstDEI	CTNAG	2 cut(s)	59, 434
BstEII	GGTNACC	1 cut(s)	142
BstFNI	CGCG	2 cut(s)	51, 525
BstHHI	GCGC	2 cut(s)	53, 525
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	139
BstPAI	GACNNNNGTC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	113, 137, 215, 310
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	2 cut(s)	51, 525
BstV1I	GCAGC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	113, 160, 310
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	120, 200, 537
CfoI	GCGC	2 cut(s)	53, 525
Cfr10I	RCCGGY	2 cut(s)	156, 230
Cfr13I	GGNCC	5 cut(s)	33, 111, 159, 308, 556
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	45
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	45
DdeI	CTNAG	2 cut(s)	59, 434
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	33, 556
Eco91I	GGTNACC	1 cut(s)	142
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	1 cut(s)	89
FaiI	YATR	7 cut(s)	87, 253, 306, 334, 336, 355, 562
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	301, 368
Fsp4HI	GCNGC	2 cut(s)	301, 368
FspBI	CTAG	2 cut(s)	221, 410
GlaI	GCGC	2 cut(s)	52, 524
GluI	GCNGC	2 cut(s)	301, 368
HaeIII	GGCC	3 cut(s)	113, 160, 310
HapII	CCGG	5 cut(s)	114, 157, 216, 231, 311
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	2 cut(s)	53, 525
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	51, 523
HinP1I	GCGC	2 cut(s)	51, 523
HinfI	GANTC	2 cut(s)	19, 527
HpaII	CCGG	5 cut(s)	114, 157, 216, 231, 311
HphI	GGTGA	3 cut(s)	136, 245, 432
Hpy166II	GTNNAC	2 cut(s)	47, 440
Hpy188III	TCNNGA	3 cut(s)	6, 31, 152
Hpy8I	GTNNAC	2 cut(s)	47, 440
HpyAV	CCTTC	3 cut(s)	218, 233, 284
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	90, 99
HpyCH4V	TGCA	2 cut(s)	351, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	59, 434
HpySE526I	ACGT	2 cut(s)	90, 99
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	51, 523
Kzo9I	GATC	1 cut(s)	387
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	221, 410
MaeII	ACGT	2 cut(s)	90, 99
MaeIII	GTNAC	3 cut(s)	133, 142, 294
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	3 cut(s)	248, 288, 291
MfeI	CAATTG	2 cut(s)	346, 362
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	4 cut(s)	346, 362, 422, 456
MlyI	GAGTC	2 cut(s)	13, 521
MmeI	TCCRAC	1 cut(s)	189
MseI	TTAA	2 cut(s)	500, 519
MspI	CCGG	5 cut(s)	114, 157, 216, 231, 311
MspR9I	CCNGG	4 cut(s)	115, 139, 217, 312
MunI	CAATTG	2 cut(s)	346, 362
MvaI	CCWGG	1 cut(s)	139
MvnI	CGCG	2 cut(s)	51, 525
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	3 cut(s)	115, 217, 312
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	4 cut(s)	35, 161, 229, 558
NmuCI	GTSAC	3 cut(s)	133, 142, 294
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	302, 369
PleI	GAGTC	2 cut(s)	13, 521
PpsI	GAGTC	2 cut(s)	13, 521
PshAI	GACNNNNGTC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	4 cut(s)	35, 161, 229, 558
PspPI	GGNCC	5 cut(s)	33, 111, 159, 308, 556
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	1 cut(s)	46
RsaNI	GTAC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	500, 519
SatI	GCNGC	2 cut(s)	301, 368
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	5 cut(s)	33, 111, 159, 308, 556
SchI	GAGTC	2 cut(s)	13, 521
ScrFI	CCNGG	4 cut(s)	115, 139, 217, 312
SetI	ASST	8 cut(s)	93, 102, 140, 149, 406, 445, 472, 498
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	477
SgrAI	CRCCGGYG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	33, 556
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	346, 362, 422, 456
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	2 cut(s)	221, 410
StyD4I	CCNGG	4 cut(s)	113, 137, 215, 310
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	2 cut(s)	93, 102
TaqI	TCGA	2 cut(s)	17, 288
TasI	AATT	4 cut(s)	346, 362, 422, 456
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	500, 519
Tru9I	TTAA	2 cut(s)	500, 519
TseFI	GTSAC	3 cut(s)	133, 142, 294
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	3 cut(s)	133, 142, 294
TspDTI	ATGAA	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	33, 556
XapI	RAATTY	1 cut(s)	422
XspI	CTAG	2 cut(s)	221, 410
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.