Rh6CG147400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Forward (+)
19197926 .. 19199879
1954 bp
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UTR
Exon/CDS
Intron
Rh6CG147400.1

Sequence Viewer

Length: 282 bp
ATGGCCTTCCCAAAGGATCAAGCTGTTGTTGGAGAAGTGAACTCTTGGTTAGATGACAACCTCATTTGGTCATTCACTAAACTGCGACTTGTGAAAATAACCAGCATCTCTGGTGCCAAAGCTGAATTAGATTTCATTAGATTTTTGCTTTTAAGTTCACCTGTGCTTGAGCGGATGACTATTAAGCCTGCTTCTGTGAATGGTTCTTCAGAACTGCTGAAAAAGTTGCTCCGGCTTGGGCGTGCCTCGGTGCATTCAGAGATAATCTACTTGGACCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

9.16

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 27 - 61 3.3e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 192
AluBI AGCT 2 cut(s) 23, 122
AluI AGCT 2 cut(s) 23, 122
AlwI GGATC 1 cut(s) 24
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 150
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 115, 276
BmsI GCATC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 180
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 232
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 2 cut(s) 115, 276
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 189, 243
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 189, 243
Cfr13I GGNCC 1 cut(s) 274
CviJI RGCY 5 cut(s) 5, 23, 122, 187, 235
CviKI_1 RGCY 5 cut(s) 5, 23, 122, 187, 235
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 192
FokI GGATG 1 cut(s) 187
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 232
HpaII CCGG 1 cut(s) 232
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 2 cut(s) 40, 158
Hpy188I TCNGA 2 cut(s) 211, 259
Hpy8I GTNNAC 2 cut(s) 40, 158
HpyAV CCTTC 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 96, 115, 174, 201, 245
LweI GCATC 1 cut(s) 114
MalI GATC 1 cut(s) 18
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 198
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 2 cut(s) 71, 256
MseI TTAA 2 cut(s) 152, 183
MspI CCGG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 253
NdeII GATC 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 115, 276
PctI GAATGC 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 115, 276
PspPI GGNCC 1 cut(s) 274
SaqAI TTAA 2 cut(s) 152, 183
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 274
SetI ASST 4 cut(s) 25, 63, 124, 163
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 172
TasI AATT 1 cut(s) 125
Tru1I TTAA 2 cut(s) 152, 183
Tru9I TTAA 2 cut(s) 152, 183
TspDTI ATGAA 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.