Rh6CG042500

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4174169 .. 4175918
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG042500.1

Sequence Viewer

Length: 393 bp
ATGTCAATTCTTGATCAAGAAAAAGGCAAAGCACCATACAAGATTACAAACACGAGAGAAGAAGAACAGTCGAAGGTGGATCCGAGAGAGAAACTCCCAAGGATACAGTCTATTGTAGAAGAAGTGAACTCTCCTTGTGTAAATGACAACTACAATTGCACATTTTCTCAACTGCGACTTGTGAAAATAACTGAGATCTCTGGTGTTAAAGCTGAACTAGATTTCATCAGATTTCTACTTTTAAGTTCACCTGTGCTTGAGAGAATGACTGTCACGCCTCGTGGATTTCCCAAGCCTGGTTTTCTGAAACTAGTAAAAGAGCTACTCCAGTTTAAACGTGAATCAAAGCATGCAGAGATTATTCTCCTGGACCCATATTCATCACTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

8.55

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 53 - 90 1.2e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 74, 87
AfiI CCNNNNNNNGG 1 cut(s) 296
AhlI ACTAGT 1 cut(s) 310
AjnI CCWGG 2 cut(s) 295, 366
AluBI AGCT 2 cut(s) 212, 322
AluI AGCT 2 cut(s) 212, 322
AlwI GGATC 2 cut(s) 74, 87
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 370
BamHI GGATCC 1 cut(s) 79
BauI CACGAG 2 cut(s) 52, 279
BciT130I CCWGG 2 cut(s) 297, 368
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 13
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 2 cut(s) 218, 311
BfuI GTATCC 1 cut(s) 96
BglII AGATCT 1 cut(s) 195
Bme1390I CCNGG 2 cut(s) 297, 368
Bme18I GGWCC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 81, 372
BmrFI CCNGG 2 cut(s) 297, 368
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 2 cut(s) 297, 368
BseDI CCNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 296
Bsp143I GATC 3 cut(s) 13, 79, 195
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 81, 372
BspPI GGATC 2 cut(s) 74, 87
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 3 cut(s) 13, 79, 195
BssSI CACGAG 2 cut(s) 52, 279
BssT1I CCWWGG 1 cut(s) 98
Bst2BI CACGAG 2 cut(s) 52, 279
Bst2UI CCWGG 2 cut(s) 297, 368
Bst4CI ACNGT 3 cut(s) 69, 108, 271
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 192
BstKTI GATC 3 cut(s) 16, 82, 198
BstMBI GATC 3 cut(s) 13, 79, 195
BstNI CCWGG 2 cut(s) 297, 368
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 295, 366
BstX2I RGATCY 2 cut(s) 79, 195
BstYI RGATCY 2 cut(s) 79, 195
BsuI GTATCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 370
CviAII CATG 1 cut(s) 350
CviJI RGCY 3 cut(s) 212, 295, 322
CviKI_1 RGCY 3 cut(s) 212, 295, 322
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 15, 81, 197
DpnII GATC 3 cut(s) 13, 79, 195
DraI TTTAAA 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 295, 366
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 353
FaiI YATR 3 cut(s) 37, 351, 376
FatI CATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 13
FspBI CTAG 2 cut(s) 218, 311
GsuI CTGGAG 1 cut(s) 311
Hin1II CATG 1 cut(s) 353
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 127, 248
Hpy188I TCNGA 3 cut(s) 84, 230, 306
Hpy188III TCNNGA 2 cut(s) 11, 17
Hpy8I GTNNAC 2 cut(s) 127, 248
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 69, 108, 271
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 159, 353
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 1 cut(s) 353
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 3 cut(s) 13, 79, 195
LpnPI CCDG 7 cut(s) 186, 264, 282, 309, 341, 353, 380
MaeI CTAG 2 cut(s) 218, 311
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 15, 81, 197
MboI GATC 3 cut(s) 13, 79, 195
MboII GAAGA 3 cut(s) 71, 74, 131
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 2 cut(s) 79, 195
MluCI AATT 3 cut(s) 6, 154, 388
MnlI CCTC 1 cut(s) 288
MseI TTAA 3 cut(s) 207, 242, 333
MspR9I CCNGG 2 cut(s) 297, 368
MssI GTTTAAAC 1 cut(s) 334
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 2 cut(s) 297, 368
NdeII GATC 3 cut(s) 13, 79, 195
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 2 cut(s) 81, 372
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 366
PmeI GTTTAAAC 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 295, 366
PspGI CCWGG 2 cut(s) 295, 366
PspN4I GGNNCC 2 cut(s) 81, 372
PspPI GGNCC 1 cut(s) 370
PsuI RGATCY 2 cut(s) 79, 195
SaqAI TTAA 3 cut(s) 207, 242, 333
Sau3AI GATC 3 cut(s) 13, 79, 195
Sau96I GGNCC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 297, 368
SetI ASST 5 cut(s) 78, 214, 253, 324, 340
SinI GGWCC 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 310
SphI GCATGC 1 cut(s) 353
Sse9I AATT 3 cut(s) 6, 154, 388
SspMI CTAG 2 cut(s) 218, 311
StyD4I CCNGG 2 cut(s) 295, 366
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 69, 108, 271
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 6, 154, 388
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 207, 242, 333
Tru9I TTAA 3 cut(s) 207, 242, 333
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 214, 369
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 1 cut(s) 353
XspI CTAG 2 cut(s) 218, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.