F-box FBD LRR-repeat protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1157400.v1.1 |
| rosa_chinensis | RchiOBHm_Chr7g0205951 |
| rosa_laevigata | RLG00000012688 |
| rosa_multiflora | Rmu_sc0004084.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00383120 |
| rosa_samantha | Rh2BG210200 Rh3BG070100 Rh6AG049700 Rh6CG041600 Rh6CG041700 Rh6CG041800 Rh6CG041900 Rh6CG042000 Rh6CG042100 Rh6CG042200 Rh6CG042500 Rh6CG042600 Rh6CG042900 Rh6CG043100 Rh6CG043200 Rh6CG147400 Rh6CG422400 Rh6DG038000 Rh7CG240000 Rh7DG232200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 7, 102, 235 |
| AcsI | RAATTY | 1 cut(s) | 120 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 29 |
| AluBI | AGCT | 1 cut(s) | 208 |
| AluI | AGCT | 1 cut(s) | 208 |
| AoxI | GGCC | 2 cut(s) | 67, 237 |
| ApeKI | GCWGC | 1 cut(s) | 26 |
| ApoI | RAATTY | 1 cut(s) | 120 |
| AspS9I | GGNCC | 4 cut(s) | 4, 68, 237, 268 |
| AsuHPI | GGTGA | 1 cut(s) | 150 |
| AvaII | GGWCC | 2 cut(s) | 4, 268 |
| BbvCI | CCTCAGC | 1 cut(s) | 241 |
| BbvI | GCAGC | 1 cut(s) | 13 |
| BisI | GCNGC | 2 cut(s) | 27, 103 |
| BlsI | GCNGC | 2 cut(s) | 28, 104 |
| Bme18I | GGWCC | 2 cut(s) | 4, 268 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 68, 237, 268 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BmsI | GCATC | 1 cut(s) | 114 |
| Bpu10I | CCTNAGC | 1 cut(s) | 241 |
| BpuEI | CTTGAG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 29 |
| Bse3DI | GCAATG | 1 cut(s) | 70 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 29 |
| BseMI | GCAATG | 1 cut(s) | 70 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseXI | GCAGC | 1 cut(s) | 13 |
| BshFI | GGCC | 2 cut(s) | 69, 239 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 29 |
| BsnI | GGCC | 2 cut(s) | 69, 239 |
| BspACI | CCGC | 3 cut(s) | 7, 102, 235 |
| BspANI | GGCC | 2 cut(s) | 69, 239 |
| BspCNI | CTCAG | 1 cut(s) | 254 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BsrDI | GCAATG | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 3 cut(s) | 24, 189, 237 |
| BstDEI | CTNAG | 1 cut(s) | 241 |
| BstV1I | GCAGC | 1 cut(s) | 13 |
| BsuRI | GGCC | 2 cut(s) | 69, 239 |
| Cac8I | GCNNGC | 3 cut(s) | 24, 189, 237 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 68, 237, 268 |
| CviAII | CATG | 2 cut(s) | 163, 273 |
| CviJI | RGCY | 6 cut(s) | 22, 69, 187, 208, 239, 245 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 69, 187, 208, 239, 245 |
| DdeI | CTNAG | 1 cut(s) | 241 |
| Eco32I | GATATC | 1 cut(s) | 115 |
| Eco47I | GGWCC | 2 cut(s) | 4, 268 |
| EcoRV | GATATC | 1 cut(s) | 115 |
| FaeI | CATG | 2 cut(s) | 166, 276 |
| FaiI | YATR | 2 cut(s) | 164, 274 |
| FatI | CATG | 2 cut(s) | 162, 272 |
| FauI | CCCGC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 2 cut(s) | 27, 103 |
| Fsp4HI | GCNGC | 2 cut(s) | 27, 103 |
| GluI | GCNGC | 2 cut(s) | 27, 103 |
| HaeIII | GGCC | 2 cut(s) | 69, 239 |
| Hin1II | CATG | 2 cut(s) | 166, 276 |
| HphI | GGTGA | 1 cut(s) | 150 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 140 |
| HpyCH4V | TGCA | 2 cut(s) | 63, 251 |
| HpyF3I | CTNAG | 1 cut(s) | 241 |
| Hsp92II | CATG | 2 cut(s) | 166, 276 |
| LmnI | GCTCC | 1 cut(s) | 205 |
| LpnPI | CCDG | 6 cut(s) | 15, 24, 36, 110, 194, 201 |
| Lsp1109I | GCAGC | 1 cut(s) | 13 |
| LweI | GCATC | 1 cut(s) | 114 |
| MboII | GAAGA | 1 cut(s) | 184 |
| MfeI | CAATTG | 1 cut(s) | 199 |
| MluCI | AATT | 5 cut(s) | 40, 96, 120, 154, 199 |
| MnlI | CCTC | 1 cut(s) | 250 |
| MseI | TTAA | 2 cut(s) | 183, 231 |
| MunI | CAATTG | 1 cut(s) | 199 |
| NlaIII | CATG | 2 cut(s) | 166, 276 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| PkrI | GCNGC | 2 cut(s) | 28, 104 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PspPI | GGNCC | 4 cut(s) | 4, 68, 237, 268 |
| SaqAI | TTAA | 2 cut(s) | 183, 231 |
| SatI | GCNGC | 2 cut(s) | 27, 103 |
| Sau96I | GGNCC | 4 cut(s) | 4, 68, 237, 268 |
| SetI | ASST | 2 cut(s) | 129, 210 |
| SfaNI | GCATC | 1 cut(s) | 114 |
| SinI | GGWCC | 2 cut(s) | 4, 268 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| Sse9I | AATT | 5 cut(s) | 40, 96, 120, 154, 199 |
| SsiI | CCGC | 3 cut(s) | 7, 102, 235 |
| TaqI | TCGA | 2 cut(s) | 117, 226 |
| TasI | AATT | 5 cut(s) | 40, 96, 120, 154, 199 |
| TauI | GCSGC | 1 cut(s) | 105 |
| Tru1I | TTAA | 2 cut(s) | 183, 231 |
| Tru9I | TTAA | 2 cut(s) | 183, 231 |
| TseI | GCWGC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 268 |
| XapI | RAATTY | 1 cut(s) | 120 |