Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004084.1

Orthogroup ID

OG0007537

Physical Location & Seq

Genomic Coordinates Reverse (-)

60562 .. 61984

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004084.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgaagatggagctggataaacttagcaacttaccttctgagattatagaccaaatcttatacaaaatgcctattaaggaggctgtgagaacatgtgttttatcaaatgagtggagatataaatgggctatgctgtcacattttgtgtttgatgaacagtgtgacacaactctagaccactccacctttgtcgacattgttgatcgcatgctcttacttaacattggccccatgcacaagttcaagctttcccatcacaaacgtgtagccacaagtgtttttaaggatgttattcttaaaaatacctcaaatcttgttgatgttactatttgtttgaactacaatgaccagggacgctttcttagcagctctagcaatttgctcaagttttttgcttacctgcctcaaattcaaaggctcatattggagaactacttcctaaagtatttggctgttggtaacttgcgaacaaagctgccaataccatgcctgtatctgaagtttctttctatacacatttgtttggttaatctggagcagtttttaacagttctatgccttatgaaaagctcccctgcactgcaagaactcatactcgtgtccatccgagatgatgatgctgttgcaggagaaatgaactcttggttagatgacaaccggagttgtcaattctcccaactgcagctagttaaaatatttggcctcaggggtgtcattgctgaactagagtttatcagatttgtgctcttaaggtcacccatacttaagtcaatgactgtaaaacctcattctgacgatggttcttcggaactatttaaaaagtggcttcggtttaagcgtgtctccgtggatgcagagataatctacttggatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

292

Amino Acids

33.87

Weight (kDa)

8.39

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007537)

Species	Orthologous Gene IDs
malus_domestica	MD05G1157400.v1.1
rosa_chinensis	RchiOBHm_Chr7g0205951
rosa_laevigata	RLG00000012688
rosa_multiflora	Rmu_sc0004084.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383120
rosa_samantha	Rh2BG210200 Rh3BG070100 Rh6AG049700 Rh6CG041600 Rh6CG041700 Rh6CG041800 Rh6CG041900 Rh6CG042000 Rh6CG042100 Rh6CG042200 Rh6CG042500 Rh6CG042600 Rh6CG042900 Rh6CG043100 Rh6CG043200 Rh6CG147400 Rh6CG422400 Rh6DG038000 Rh7CG240000 Rh7DG232200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	866
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	518
AflII	CTTAAG	2 cut(s)	748, 764
AflIII	ACRYGT	2 cut(s)	92, 262
AgsI	TTSAA	3 cut(s)	244, 337, 413
AjnI	CCWGG	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	6 cut(s)	13, 247, 369, 475, 570, 685
AluI	AGCT	6 cut(s)	13, 247, 369, 475, 570, 685
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	2 cut(s)	226, 700
ApeKI	GCWGC	3 cut(s)	366, 475, 682
ApoI	RAATTY	1 cut(s)	408
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	747
AxyI	CCTNAGG	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	871
BauI	CACGAG	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	378, 462, 694
BccI	CCATC	3 cut(s)	261, 611, 791
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	4 cut(s)	173, 372, 686, 725
BfmI	CTRYAG	1 cut(s)	680
BfrI	CTTAAG	2 cut(s)	748, 764
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	367, 476, 683
BlsI	GCNGC	3 cut(s)	368, 477, 684
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	229, 873
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	607, 841
BpmI	CTGGAG	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	349, 846
BsaWI	WCCGGW	1 cut(s)	657
Bse21I	CCTNAGG	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	349, 846
BseGI	GGATG	3 cut(s)	292, 603, 856
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	30, 718
BseXI	GCAGC	3 cut(s)	378, 462, 694
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	228, 702
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	228, 702
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	202, 871
BspANI	GGCC	2 cut(s)	228, 702
BspCNI	CTCAG	2 cut(s)	31, 717
BspLI	GGNNCC	2 cut(s)	229, 873
BspMAI	CTGCAG	1 cut(s)	684
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	866
BspTI	CTTAAG	2 cut(s)	748, 764
BsrDI	GCAATG	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	349, 846
BssMI	GATC	2 cut(s)	202, 871
BssSI	CACGAG	1 cut(s)	596
Bst2BI	CACGAG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	3 cut(s)	159, 550, 778
BstAFI	CTTAAG	2 cut(s)	748, 764
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	4 cut(s)	23, 39, 362, 704
BstDSI	CCRYGG	1 cut(s)	846
BstEII	GGTNACC	1 cut(s)	753
BstF5I	GGATG	3 cut(s)	292, 603, 856
BstKTI	GATC	2 cut(s)	205, 874
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	2 cut(s)	202, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 372, 472
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	96, 211
BstPI	GGTNACC	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	378, 462, 694
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
Bsu36I	CCTNAGG	1 cut(s)	704
BsuRI	GGCC	2 cut(s)	228, 702
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	3 cut(s)	292, 603, 856
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	2 cut(s)	164, 578
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	363
CviAII	CATG	5 cut(s)	93, 208, 232, 486, 876
DdeI	CTNAG	4 cut(s)	23, 39, 362, 704
DpnI	GATC	2 cut(s)	204, 873
DpnII	GATC	2 cut(s)	202, 871
DraI	TTTAAA	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	704
Eco91I	GGTNACC	1 cut(s)	753
EcoO65I	GGTNACC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	96, 211, 235, 489, 879
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	5 cut(s)	92, 207, 231, 485, 875
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	367, 476, 683
FokI	GGATG	3 cut(s)	299, 590, 863
Fsp4HI	GCNGC	3 cut(s)	367, 476, 683
FspBI	CTAG	4 cut(s)	173, 372, 686, 725
GluI	GCNGC	3 cut(s)	367, 476, 683
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	2 cut(s)	228, 702
HapII	CCGG	1 cut(s)	658
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	96, 211, 235, 489, 879
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	245
HpaII	CCGG	1 cut(s)	658
HphI	GGTGA	1 cut(s)	747
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	6 cut(s)	40, 498, 608, 737, 793, 808
Hpy188III	TCNNGA	2 cut(s)	173, 533
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	3 cut(s)	159, 550, 778
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	6 cut(s)	235, 578, 583, 626, 682, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 372, 472
HpyF3I	CTNAG	4 cut(s)	23, 39, 362, 704
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	5 cut(s)	96, 211, 235, 489, 879
Kzo9I	GATC	2 cut(s)	202, 871
LmnI	GCTCC	3 cut(s)	10, 535, 575
LpnPI	CCDG	9 cut(s)	335, 362, 413, 503, 518, 588, 612, 671, 691
Lsp1109I	GCAGC	3 cut(s)	378, 462, 694
LweI	GCATC	2 cut(s)	607, 841
MaeI	CTAG	4 cut(s)	173, 372, 686, 725
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	5 cut(s)	135, 161, 322, 458, 753
MalI	GATC	2 cut(s)	204, 873
MboI	GATC	2 cut(s)	202, 871
MboII	GAAGA	2 cut(s)	16, 795
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	3 cut(s)	376, 408, 668
MnlI	CCTC	5 cut(s)	73, 316, 414, 713, 795
MroXI	GAANNNNTTC	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	261, 596
MspCI	CTTAAG	2 cut(s)	748, 764
MspI	CCGG	1 cut(s)	658
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	3 cut(s)	363, 372, 472
NdeII	GATC	2 cut(s)	202, 871
NlaIII	CATG	5 cut(s)	96, 211, 235, 489, 879
NlaIV	GGNNCC	2 cut(s)	229, 873
NmuCI	GTSAC	3 cut(s)	135, 161, 753
NspI	RCATGY	2 cut(s)	96, 211
OliI	CACNNNNGTG	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	211
PciI	ACATGT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PdmI	GAANNNNTTC	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	368, 477, 684
PscI	ACATGT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	753
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	229, 873
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	871
RseI	CAYNNNNRTG	2 cut(s)	261, 596
SalI	GTCGAC	1 cut(s)	191
SatI	GCNGC	3 cut(s)	367, 476, 683
Sau3AI	GATC	2 cut(s)	202, 871
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	2 cut(s)	607, 841
SfcI	CTRYAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	2 cut(s)	261, 596
SmlI	CTYRAG	3 cut(s)	383, 748, 764
SmoI	CTYRAG	3 cut(s)	383, 748, 764
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	376, 408, 668
SspI	AATATT	1 cut(s)	696
SspMI	CTAG	4 cut(s)	173, 372, 686, 725
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	3 cut(s)	159, 550, 778
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	192
TasI	AATT	3 cut(s)	376, 408, 668
TscAI	CASTG	2 cut(s)	164, 585
TseFI	GTSAC	3 cut(s)	135, 161, 753
TseI	GCWGC	3 cut(s)	366, 475, 682
Tsp45I	GTSAC	3 cut(s)	135, 161, 753
TspDTI	ATGAA	4 cut(s)	17, 168, 578, 650
TspGWI	ACGGA	1 cut(s)	835
TspRI	CASTG	2 cut(s)	164, 585
Vha464I	CTTAAG	2 cut(s)	748, 764
XapI	RAATTY	1 cut(s)	408
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	2 cut(s)	96, 211
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	4 cut(s)	173, 372, 686, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.