Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007537

Physical Location & Seq

Genomic Coordinates Reverse (-)

4138056 .. 4160617

Gene Structure 22562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG042200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCAAGCTCACCATGAGTTCGTTCTTGTGGACCCTGAAAAGGATCACGCTGCCGTGGGAGAAGTGGAATCTTGTTTATATGACAACTACAACTGTGCATACGCTCAACTGCGGCTTGTGGAAATAACCAAGATCTCTGGTGTAAAAGCTCAACTAGATTTCATTGAATCTCTGCTTCTAAGTTCACCTGTGCTTGAGAGAATGACTGTTCAACCTGCTTCTGTCGATGGTTTTTTGAAGCTAGTAAAAGATTTACTTCTGTTTAAGCGTGATTCAAAGCGTGCAGAGATAACGGTTTTGGACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

5.06

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007537)

Species	Orthologous Gene IDs
malus_domestica	MD05G1157400.v1.1
rosa_chinensis	RchiOBHm_Chr7g0205951
rosa_laevigata	RLG00000012688
rosa_multiflora	Rmu_sc0004084.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383120
rosa_samantha	Rh2BG210200 Rh3BG070100 Rh6AG049700 Rh6CG041600 Rh6CG041700 Rh6CG041800 Rh6CG041900 Rh6CG042000 Rh6CG042100 Rh6CG042200 Rh6CG042500 Rh6CG042600 Rh6CG042900 Rh6CG043100 Rh6CG043200 Rh6CG147400 Rh6CG422400 Rh6DG038000 Rh7CG240000 Rh7DG232200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	167, 212, 238, 276
AluBI	AGCT	3 cut(s)	8, 149, 241
AluI	AGCT	3 cut(s)	8, 149, 241
AlwI	GGATC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	31, 301
AsuHPI	GGTGA	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	31, 301
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	155, 242
BfuAI	ACCTGC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	2 cut(s)	51, 113
BlsI	GCNGC	2 cut(s)	52, 114
Bme18I	GGWCC	2 cut(s)	31, 301
BmgT120I	GGNCC	2 cut(s)	31, 301
BmiI	GGNNCC	2 cut(s)	33, 303
BpuEI	CTTGAG	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	40
Bsp143I	GATC	2 cut(s)	43, 132
BspACI	CCGC	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	33, 303
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	43, 132
Bst4CI	ACNGT	3 cut(s)	95, 208, 295
BstC8I	GCNNGC	2 cut(s)	6, 282
BstDEI	CTNAG	1 cut(s)	179
BstDSI	CCRYGG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	46, 135
BstMBI	GATC	2 cut(s)	43, 132
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	6, 282
Cfr13I	GGNCC	2 cut(s)	31, 301
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	8, 115, 149, 241
CviKI_1	RGCY	4 cut(s)	8, 115, 149, 241
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	45, 134
DpnII	GATC	2 cut(s)	43, 132
Eco47I	GGWCC	2 cut(s)	31, 301
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 79, 81, 100, 307
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	51, 113
Fsp4HI	GCNGC	2 cut(s)	51, 113
FspBI	CTAG	2 cut(s)	155, 242
GluI	GCNGC	2 cut(s)	51, 113
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	3 cut(s)	68, 167, 272
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	31, 185
Hpy8I	GTNNAC	2 cut(s)	31, 185
HpyCH4III	ACNGT	3 cut(s)	95, 208, 295
HpyCH4V	TGCA	3 cut(s)	4, 98, 284
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	43, 132
LpnPI	CCDG	4 cut(s)	48, 123, 201, 228
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	155, 242
MalI	GATC	2 cut(s)	45, 134
MboI	GATC	2 cut(s)	43, 132
MflI	RGATCY	1 cut(s)	132
MseI	TTAA	1 cut(s)	264
NdeII	GATC	2 cut(s)	43, 132
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	2 cut(s)	33, 303
PfeI	GAWTC	3 cut(s)	68, 167, 272
PkrI	GCNGC	2 cut(s)	52, 114
PspN4I	GGNNCC	2 cut(s)	33, 303
PspPI	GGNCC	2 cut(s)	31, 301
PsuI	RGATCY	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	51, 113
Sau3AI	GATC	2 cut(s)	43, 132
Sau96I	GGNCC	2 cut(s)	31, 301
SetI	ASST	5 cut(s)	10, 151, 190, 217, 243
SinI	GGWCC	2 cut(s)	31, 301
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	2 cut(s)	155, 242
TaaI	ACNGT	3 cut(s)	95, 208, 295
TaqI	TCGA	1 cut(s)	225
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	3 cut(s)	68, 167, 272
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	31, 301
XspI	CTAG	2 cut(s)	155, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.