Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007537

Physical Location & Seq

Genomic Coordinates Reverse (-)

22407862 .. 22409284

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAAGATGGAGCTGGATAAACTTAGCAACTTACCTTCTGAGATTATAGACCAAATCTTATACAAAATGCCTATTAAGGAGGCTGTGAGAACATGTGTTTTATCAAGTGTTTTTAAGGATGTTATTCTTAAAAATACCTCAAATCTTGTTGATGTTACTATTTGTTTGAACTACAATGACCAGGGACGCTTTCTTAGCAGCTCTAGCAATTTGCCCAAGTTTTTTGCTTACCTGCCTCAAATTCAAAGGCTCATATTGGAGAACTACTTCCTAAAGTATTTGGCTGTTGGTAACTTGCGAACAAAGCTGCCAATACCATGCCTGTATCTGAAGTTTCTTTCTATACACATTTGCTTGGTTAATCTGGAGGAGTTTTCAACAGTTCTATGCCTTATGAAAAGCTCCCCTGCACTGCAAGAACTAAAACTCGTGTCCATCCGAGATGATGATGCTGTTGCAGGAGAAATGAACTCTTGGTTAGATGACAACCGGAGTTGTCAATTCTTCCAACTGCAGCTAGTTAAAATATTTGGCCTCAGGGGTGTCATTGCTGAACTAGAGTTTATCAGATTTGTGCTCTTAAGGTCACCCATACTTAAGTCAATGACTGTAAAACCTCGTTCTGACGATGGTTCTTCGGAACTATTAAAAAAGTGGCTTCGGTTTAAGCGTGTCTCCGTGGATGCAGAGATAATCTACTTGGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

236

Amino Acids

27.15

Weight (kDa)

8.67

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007537)

Species	Orthologous Gene IDs
malus_domestica	MD05G1157400.v1.1
rosa_chinensis	RchiOBHm_Chr7g0205951
rosa_laevigata	RLG00000012688
rosa_multiflora	Rmu_sc0004084.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383120
rosa_samantha	Rh2BG210200 Rh3BG070100 Rh6AG049700 Rh6CG041600 Rh6CG041700 Rh6CG041800 Rh6CG041900 Rh6CG042000 Rh6CG042100 Rh6CG042200 Rh6CG042500 Rh6CG042600 Rh6CG042900 Rh6CG043100 Rh6CG043200 Rh6CG147400 Rh6CG422400 Rh6DG038000 Rh7CG240000 Rh7DG232200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	698
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	350
AflII	CTTAAG	2 cut(s)	580, 596
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	169, 245, 378
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	13, 201, 307, 402, 517
AluI	AGCT	5 cut(s)	13, 201, 307, 402, 517
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	679
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	3 cut(s)	198, 307, 514
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	579
AxyI	CCTNAGG	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	703
BauI	CACGAG	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	210, 294, 526
BccI	CCATC	2 cut(s)	443, 623
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	679
BfaI	CTAG	3 cut(s)	204, 518, 557
BfmI	CTRYAG	1 cut(s)	512
BfrI	CTTAAG	2 cut(s)	580, 596
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	3 cut(s)	199, 308, 515
BlsI	GCNGC	3 cut(s)	200, 309, 516
Bme1390I	CCNGG	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	439, 673
BpmI	CTGGAG	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	181, 678
BsaWI	WCCGGW	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	181, 678
BseGI	GGATG	3 cut(s)	124, 435, 688
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	30, 550
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	210, 294, 526
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	1 cut(s)	703
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	2 cut(s)	31, 549
BspLI	GGNNCC	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	698
BspTI	CTTAAG	2 cut(s)	580, 596
BsrDI	GCAATG	1 cut(s)	546
BssECI	CCNNGG	2 cut(s)	181, 678
BssMI	GATC	1 cut(s)	703
BssSI	CACGAG	1 cut(s)	428
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	382, 610
BstAFI	CTTAAG	2 cut(s)	580, 596
BstDEI	CTNAG	4 cut(s)	23, 39, 194, 536
BstDSI	CCRYGG	1 cut(s)	678
BstEII	GGTNACC	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	124, 435, 688
BstKTI	GATC	1 cut(s)	706
BstMAI	GTCTC	1 cut(s)	679
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	585
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	3 cut(s)	210, 294, 526
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	534
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	124, 435, 688
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	410
BveI	ACCTGC	1 cut(s)	240
CseI	GACGC	1 cut(s)	195
CviAII	CATG	3 cut(s)	93, 318, 708
DdeI	CTNAG	4 cut(s)	23, 39, 194, 536
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	585
EcoO65I	GGTNACC	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	96, 321, 711
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	3 cut(s)	92, 317, 707
Fnu4HI	GCNGC	3 cut(s)	199, 308, 515
FokI	GGATG	3 cut(s)	131, 422, 695
Fsp4HI	GCNGC	3 cut(s)	199, 308, 515
FspBI	CTAG	3 cut(s)	204, 518, 557
GluI	GCNGC	3 cut(s)	199, 308, 515
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	1 cut(s)	490
HgaI	GACGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	96, 321, 711
HpaII	CCGG	1 cut(s)	490
HphI	GGTGA	1 cut(s)	579
Hpy188I	TCNGA	6 cut(s)	40, 330, 440, 569, 625, 640
Hpy188III	TCNNGA	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	2 cut(s)	382, 610
HpyCH4V	TGCA	5 cut(s)	410, 415, 458, 514, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
HpyF3I	CTNAG	4 cut(s)	23, 39, 194, 536
Hsp92II	CATG	3 cut(s)	96, 321, 711
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	2 cut(s)	10, 407
LpnPI	CCDG	9 cut(s)	167, 194, 245, 335, 350, 420, 444, 503, 523
Lsp1109I	GCAGC	3 cut(s)	210, 294, 526
LweI	GCATC	2 cut(s)	439, 673
MaeI	CTAG	3 cut(s)	204, 518, 557
MaeIII	GTNAC	3 cut(s)	154, 290, 585
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	3 cut(s)	16, 496, 627
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	3 cut(s)	208, 240, 500
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	6 cut(s)	73, 148, 246, 361, 545, 627
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	9 cut(s)	75, 114, 129, 360, 522, 581, 597, 647, 666
MspCI	CTTAAG	2 cut(s)	580, 596
MspI	CCGG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	195, 204, 304
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	3 cut(s)	96, 321, 711
NlaIV	GGNNCC	1 cut(s)	705
NmuCI	GTSAC	1 cut(s)	585
NspI	RCATGY	1 cut(s)	96
PciI	ACATGT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PdmI	GAANNNNTTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	200, 309, 516
PscI	ACATGT	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	180
PspEI	GGTNACC	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	705
PstI	CTGCAG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	703
SaqAI	TTAA	9 cut(s)	75, 114, 129, 360, 522, 581, 597, 647, 666
SatI	GCNGC	3 cut(s)	199, 308, 515
Sau3AI	GATC	1 cut(s)	703
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	2 cut(s)	439, 673
SfcI	CTRYAG	1 cut(s)	512
SmlI	CTYRAG	2 cut(s)	580, 596
SmoI	CTYRAG	2 cut(s)	580, 596
Sse9I	AATT	3 cut(s)	208, 240, 500
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	3 cut(s)	204, 518, 557
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	382, 610
TasI	AATT	3 cut(s)	208, 240, 500
Tru1I	TTAA	9 cut(s)	75, 114, 129, 360, 522, 581, 597, 647, 666
Tru9I	TTAA	9 cut(s)	75, 114, 129, 360, 522, 581, 597, 647, 666
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	3 cut(s)	198, 307, 514
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	3 cut(s)	17, 410, 482
TspGWI	ACGGA	1 cut(s)	667
TspRI	CASTG	1 cut(s)	417
Vha464I	CTTAAG	2 cut(s)	580, 596
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	3 cut(s)	204, 518, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.