Rh6CG042600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4176590 .. 4176904
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG042600.1

Sequence Viewer

Length: 315 bp
ATGGATGGCAGAAAGAAACTCACAAGCAGTCCCACTGTTGTCGAAGATCAGAAATCTTCTTGTTTAGATGTGAGCTACAATTGCACACTTTCTCAACTGCGACTTGTGAAAATAACTGAGATCTCTGGTGTTAAAGCTGAACTAGATTTCATCAGATTTCTACTTTTAAGTTCACCTGTGCTTGAGAGAATGACTGTCACGCCTCATAAATTTCCCAAGCCTGTTTATGTGGAACGTTTTTCGAAACTTGTAAAAGAGCTACTCCAGTTTAAACGTGAATCAAAACATGCAGAGATTATTCTCCTGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

9.2

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 28 - 65 5.1e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 235
AcsI RAATTY 1 cut(s) 209
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 75, 137, 259
AluI AGCT 3 cut(s) 75, 137, 259
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 165
AsuII TTCGAA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 305
BfaI CTAG 1 cut(s) 143
BglII AGATCT 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 15
Bsp119I TTCGAA 1 cut(s) 242
Bsp143I GATC 2 cut(s) 46, 120
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 242
BsrI ACTGG 1 cut(s) 265
BssMI GATC 2 cut(s) 46, 120
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 37, 196
BstBI TTCGAA 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 49, 123
BstMBI GATC 2 cut(s) 46, 120
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 290
BstSCI CCNGG 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 307
CviAII CATG 1 cut(s) 287
CviJI RGCY 4 cut(s) 75, 137, 220, 259
CviKI_1 RGCY 4 cut(s) 75, 137, 220, 259
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 48, 122
DpnII GATC 2 cut(s) 46, 120
DraI TTTAAA 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 207, 228, 288, 313
FaqI GGGAC 1 cut(s) 15
FatI CATG 1 cut(s) 286
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 248
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 51, 155
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 37, 196
HpyCH4IV ACGT 2 cut(s) 235, 274
HpyCH4V TGCA 2 cut(s) 84, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 235, 274
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 46, 120
LpnPI CCDG 5 cut(s) 111, 189, 234, 278, 290
MaeI CTAG 1 cut(s) 143
MaeII ACGT 2 cut(s) 235, 274
MaeIII GTNAC 1 cut(s) 196
MalI GATC 2 cut(s) 48, 122
MboI GATC 2 cut(s) 46, 120
MboII GAAGA 2 cut(s) 48, 56
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 1 cut(s) 120
MluCI AATT 2 cut(s) 79, 209
MnlI CCTC 1 cut(s) 213
MseI TTAA 3 cut(s) 132, 167, 270
MspR9I CCNGG 1 cut(s) 305
MssI GTTTAAAC 1 cut(s) 271
MunI CAATTG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 2 cut(s) 46, 120
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 290
NspV TTCGAA 1 cut(s) 242
PfeI GAWTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 303
PmeI GTTTAAAC 1 cut(s) 271
Psp1406I AACGTT 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 120
SaqAI TTAA 3 cut(s) 132, 167, 270
Sau3AI GATC 2 cut(s) 46, 120
Sau96I GGNCC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 305
SetI ASST 6 cut(s) 77, 139, 178, 238, 261, 277
SfuI TTCGAA 1 cut(s) 242
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 79, 209
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 37, 196
TaiI ACGT 2 cut(s) 238, 277
TaqI TCGA 2 cut(s) 42, 242
TasI AATT 2 cut(s) 79, 209
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 3 cut(s) 132, 167, 270
Tru9I TTAA 3 cut(s) 132, 167, 270
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 139
TspRI CASTG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 290
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.