Rh6CG041600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4028915 .. 4030087
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG041600.1

Sequence Viewer

Length: 366 bp
ATGAACTTTGACAATCCGGATGAAATTTCAACTGTCTTATGTCTTCTGAGAAGCTCTCCTGCTCTACAAGAACTGAAAATTTTGGTGGACCCTGAAAAGGATCACGCTGCTGTGGGAGAAGTGGAATCTTGTTTATATGACAACTACAACTGTGCATACACTCAACTGCGGCTTGTGGAAATAACCAAGATCTCTGGTGTAAAAGCTCAACTAGATTTCATCGAATCTCTGCTTCTAAGTTCACCTGTGCTTGAGAGAATGACTGTTCAACCTGCTTCTGTCGATGGTTCTTTTAAGCTAGTAAAAGATTTACTTCTGTTTAAGCGTGATTCAAAGCGTGCAGAGATAATGGTTTTGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

4.71

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 24, 78
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 3 cut(s) 30, 269, 333
AluBI AGCT 3 cut(s) 54, 206, 298
AluI AGCT 3 cut(s) 54, 206, 298
AlwI GGATC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 24, 78
AspS9I GGNCC 2 cut(s) 88, 358
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 2 cut(s) 88, 358
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 278
BfaI CTAG 2 cut(s) 212, 299
BfuAI ACCTGC 1 cut(s) 280
BglII AGATCT 1 cut(s) 189
BisI GCNGC 2 cut(s) 108, 170
BlsI GCNGC 2 cut(s) 109, 171
Bme18I GGWCC 2 cut(s) 88, 358
BmgT120I GGNCC 2 cut(s) 88, 358
BmiI GGNNCC 2 cut(s) 90, 360
BpiI GAAGAC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 40, 72
BpuEI CTTGAG 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 16
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 100, 189
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 39
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 90, 360
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 1 cut(s) 108
BssMI GATC 2 cut(s) 100, 189
Bst4CI ACNGT 3 cut(s) 34, 152, 265
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 47, 236
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 2 cut(s) 103, 192
BstMBI GATC 2 cut(s) 100, 189
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtsCI GGATG 1 cut(s) 25
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 88, 358
CviJI RGCY 4 cut(s) 54, 172, 206, 298
CviKI_1 RGCY 4 cut(s) 54, 172, 206, 298
DdeI CTNAG 2 cut(s) 47, 236
DpnI GATC 2 cut(s) 102, 191
DpnII GATC 2 cut(s) 100, 189
Eco47I GGWCC 2 cut(s) 88, 358
FaiI YATR 5 cut(s) 40, 136, 138, 157, 364
FalI AAGNNNNNCTT 2 cut(s) 297, 329
Fnu4HI GCNGC 2 cut(s) 108, 170
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 2 cut(s) 108, 170
FspBI CTAG 2 cut(s) 212, 299
GluI GCNGC 2 cut(s) 108, 170
HapII CCGG 1 cut(s) 17
HinfI GANTC 3 cut(s) 125, 224, 329
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 88, 242
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 88, 242
HpyCH4III ACNGT 3 cut(s) 34, 152, 265
HpyCH4V TGCA 2 cut(s) 155, 341
HpyF3I CTNAG 2 cut(s) 47, 236
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 100, 189
LpnPI CCDG 6 cut(s) 30, 72, 105, 180, 258, 285
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 2 cut(s) 212, 299
MalI GATC 2 cut(s) 102, 191
MboI GATC 2 cut(s) 100, 189
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 24, 78
MroI TCCGGA 1 cut(s) 16
MseI TTAA 2 cut(s) 294, 321
MspI CCGG 1 cut(s) 17
NdeII GATC 2 cut(s) 100, 189
NlaIV GGNNCC 2 cut(s) 90, 360
PfeI GAWTC 3 cut(s) 125, 224, 329
PkrI GCNGC 2 cut(s) 109, 171
PspN4I GGNNCC 2 cut(s) 90, 360
PspPI GGNCC 2 cut(s) 88, 358
PsuI RGATCY 1 cut(s) 189
SaqAI TTAA 2 cut(s) 294, 321
SatI GCNGC 2 cut(s) 108, 170
Sau3AI GATC 2 cut(s) 100, 189
Sau96I GGNCC 2 cut(s) 88, 358
SetI ASST 5 cut(s) 56, 208, 247, 274, 300
SinI GGWCC 2 cut(s) 88, 358
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 24, 78
SsiI CCGC 1 cut(s) 169
SspMI CTAG 2 cut(s) 212, 299
TaaI ACNGT 3 cut(s) 34, 152, 265
TaqI TCGA 2 cut(s) 222, 282
TasI AATT 2 cut(s) 24, 78
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 125, 224, 329
Tru1I TTAA 2 cut(s) 294, 321
Tru9I TTAA 2 cut(s) 294, 321
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 17, 36, 208
VpaK11BI GGWCC 2 cut(s) 88, 358
XapI RAATTY 2 cut(s) 24, 78
XspI CTAG 2 cut(s) 212, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.