Rh6CG041900

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4056576 .. 4064145
7570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG041900.1

Sequence Viewer

Length: 378 bp
ATGGGATTGATGGTGAGGCAGAACCAAGGTGAAGAAGCCACTCGAGTTTTCATGGAGATGAAGGACTTGATGGATCAGAGAGAGAACCTCTCAAGAATATACTTCGAAGAAGTGGAGTCTCCTTGTGTAGATGACAACTACAATTGCACATTTTCTCAACTGCGACTTGTGAAAATAACTGAGATCTCTGGTGTTAAAGCTGAATTAGATTTCATCAGATTTCTGCTTTTAAGTTCACCTGTGCTTGAGAGAATGATTGTCACGCCTCGTAGATTTCCCGAGCCTACTTATGTGGATGGTTTTCCGAAACTAGTAAAAGAGCTACTCCAGTTTAAACGTGAATCAAAGCATGCAGAGATAATTCTCCTGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

125

Amino Acids

14.7

Weight (kDa)

5.11

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 49 - 86 4.4e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 81
AhlI ACTAGT 1 cut(s) 310
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 200, 322
AluI AGCT 2 cut(s) 200, 322
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 81
Ama87I CYCGRG 2 cut(s) 42, 278
AspS9I GGNCC 1 cut(s) 370
AsuHPI GGTGA 3 cut(s) 25, 41, 228
AsuII TTCGAA 1 cut(s) 105
AvaI CYCGRG 2 cut(s) 42, 278
AvaII GGWCC 1 cut(s) 370
BccI CCATC 3 cut(s) 4, 64, 290
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 123
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 1 cut(s) 311
BglII AGATCT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 370
BmeT110I CYCGRG 2 cut(s) 42, 278
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 368
BplI GAGNNNNNCTC 4 cut(s) 72, 104, 74, 106
BpmI CTGGAG 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 76, 266
BsaJI CCNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 328
BsiHKCI CYCGRG 2 cut(s) 42, 278
BsmAI GTCTC 1 cut(s) 123
BsoBI CYCGRG 2 cut(s) 42, 278
Bsp119I TTCGAA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 73, 183
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 105
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 73, 183
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 76, 186
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 73, 183
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BtsCI GGATG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 370
CviAII CATG 2 cut(s) 52, 350
CviJI RGCY 4 cut(s) 38, 200, 283, 322
CviKI_1 RGCY 4 cut(s) 38, 200, 283, 322
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 75, 185
DpnII GATC 2 cut(s) 73, 183
DraI TTTAAA 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 370
Eco88I CYCGRG 2 cut(s) 42, 278
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 55, 353
FaiI YATR 5 cut(s) 53, 100, 291, 351, 376
FatI CATG 2 cut(s) 51, 349
FokI GGATG 1 cut(s) 308
FspBI CTAG 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 311
Hin1II CATG 2 cut(s) 55, 353
HinfI GANTC 2 cut(s) 116, 341
HphI GGTGA 3 cut(s) 25, 41, 228
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 78, 218, 306
Hpy188III TCNNGA 2 cut(s) 93, 278
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 2 cut(s) 147, 353
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 2 cut(s) 55, 353
Kzo9I GATC 2 cut(s) 73, 183
LpnPI CCDG 4 cut(s) 174, 252, 341, 353
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 75, 185
MboI GATC 2 cut(s) 73, 183
MboII GAAGA 2 cut(s) 44, 119
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 1 cut(s) 183
MluCI AATT 3 cut(s) 142, 203, 360
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 3 cut(s) 9, 98, 276
MseI TTAA 3 cut(s) 195, 230, 333
MslI CAYNNNNRTG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 368
MssI GTTTAAAC 1 cut(s) 334
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 368
NdeII GATC 2 cut(s) 73, 183
NlaIII CATG 2 cut(s) 55, 353
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 1 cut(s) 353
NspV TTCGAA 1 cut(s) 105
PaeI GCATGC 1 cut(s) 353
PaeR7I CTCGAG 1 cut(s) 42
PfeI GAWTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 366
PleI GAGTC 1 cut(s) 124
PmeI GTTTAAAC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 370
PspXI VCTCGAGB 1 cut(s) 42
PsuI RGATCY 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 195, 230, 333
Sau3AI GATC 2 cut(s) 73, 183
Sau96I GGNCC 1 cut(s) 370
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 368
SetI ASST 6 cut(s) 31, 90, 202, 241, 324, 340
Sfr274I CTCGAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 1 cut(s) 370
SlaI CTCGAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 3 cut(s) 42, 91, 245
SmoI CTYRAG 3 cut(s) 42, 91, 245
SpeI ACTAGT 1 cut(s) 310
SphI GCATGC 1 cut(s) 353
Sse9I AATT 3 cut(s) 142, 203, 360
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 25
TaiI ACGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 43, 105
TasI AATT 3 cut(s) 142, 203, 360
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 195, 230, 333
Tru9I TTAA 3 cut(s) 195, 230, 333
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 40, 74, 202
VpaK11BI GGWCC 1 cut(s) 370
XceI RCATGY 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 42
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.