Rh6CG043100

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4223276 .. 4231867
8592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG043100.1

Sequence Viewer

Length: 297 bp
ATGGAGGTCCACCATGAAGAACAGGTCATTGCTGTTGATGAAGAGGCAAACTCTTGGTTGGACAACCTAGATAACGACAGAACTTGCTCATTCCCCAAACTGCGACTTGTTCAATTAACCGACTTTTCTGGTTGCAAAGCTGAACTAGATTTCATCAAATTTTTGCTACTAAATTCACCCGTGCTTGAGACGATGACTATTAGGGCTTTTTCTGCCGATGGTTCTTCAGAAGTTTTAAAGAAGTTGCTCCAGTTAAGGCGTACCTCAAGTGCAGAGATTATATACTTGGATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

98

Amino Acids

11.17

Weight (kDa)

4.66

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 34 - 67 2.9e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 2 cut(s) 158, 172
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 262
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 158, 172
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 289
BccI CCATC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 2 cut(s) 68, 146
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 291
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 206, 250
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 291
BsmAI GTCTC 1 cut(s) 182
BsmBI CGTCTC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 250
BssMI GATC 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 36
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 14
CviJI RGCY 2 cut(s) 140, 206
CviKI_1 RGCY 2 cut(s) 140, 206
CviQI GTAC 1 cut(s) 261
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
DraI TTTAAA 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 281, 283
FatI CATG 1 cut(s) 13
FspBI CTAG 2 cut(s) 68, 146
GsuI CTGGAG 1 cut(s) 233
Hin1II CATG 1 cut(s) 17
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 135, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 8, 114, 263
MaeI CTAG 2 cut(s) 68, 146
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 3 cut(s) 29, 53, 216
MflI RGATCY 1 cut(s) 289
MluCI AATT 3 cut(s) 113, 158, 172
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 2 cut(s) 37, 274
MseI TTAA 3 cut(s) 116, 236, 254
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 289
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 116, 236, 254
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 1 cut(s) 7
SetI ASST 5 cut(s) 9, 27, 69, 142, 266
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 2 cut(s) 185, 265
SmoI CTYRAG 2 cut(s) 185, 265
Sse9I AATT 3 cut(s) 113, 158, 172
SspMI CTAG 2 cut(s) 68, 146
TasI AATT 3 cut(s) 113, 158, 172
Tru1I TTAA 3 cut(s) 116, 236, 254
Tru9I TTAA 3 cut(s) 116, 236, 254
TspDTI ATGAA 3 cut(s) 30, 54, 142
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 158, 172
XspI CTAG 2 cut(s) 68, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.