Rh6CG042000

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007537
Physical Location & Seq
Reverse (-)
4095121 .. 4117093
21973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG042000.1

Sequence Viewer

Length: 330 bp
ATGAGAGTTGCCGCAGGTGAGAGGACTTTCATGCATGCAGAAATGAATGTGGACCCTAAAAAGGATCAAGCTGCTGTGGGAGAAGTGGAATCTTGTTTATATGACAACTACAACTGTGCATATACTCAACTGCGGCTTGTGGAAATAACCATGATCTCTGGTGTAAAAGCTCAACTAGATTTCATCGAATCTCTGCTTCTAAGTTCACCTTTGCTTGAGAGAATGACTGTTCAACCTGCTTCTGTCAATGGTTCTTTTAAGCTAGTAAAAGATTTACTTCTGTTTAAGCGTGATTCAAAGCGTGCAGAGATAATGGTTTTGGGCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

109

Amino Acids

12.2

Weight (kDa)

5.8

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 5
Acc36I ACCTGC 2 cut(s) 5, 244
AciI CCGC 2 cut(s) 12, 133
AclWI GGATC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 233, 297
AluBI AGCT 3 cut(s) 71, 170, 262
AluI AGCT 3 cut(s) 71, 170, 262
AlwI GGATC 1 cut(s) 72
AoxI GGCC 1 cut(s) 322
ApaI GGGCCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 52, 322, 323
AsuHPI GGTGA 2 cut(s) 29, 198
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 58
BfaI CTAG 2 cut(s) 176, 263
BfuAI ACCTGC 2 cut(s) 5, 244
BisI GCNGC 3 cut(s) 12, 72, 134
BlsI GCNGC 3 cut(s) 13, 73, 135
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 52, 322, 323
BmiI GGNNCC 2 cut(s) 54, 324
BpuEI CTTGAG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 324
BshFI GGCC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 1 cut(s) 324
Bsp120I GGGCCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 2 cut(s) 64, 153
BspACI CCGC 2 cut(s) 12, 133
BspANI GGCC 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 54, 324
BspMI ACCTGC 2 cut(s) 5, 244
BspPI GGATC 1 cut(s) 72
BssMI GATC 2 cut(s) 64, 153
Bst4CI ACNGT 2 cut(s) 116, 229
BstC8I GCNNGC 2 cut(s) 36, 303
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 2 cut(s) 67, 156
BstMBI GATC 2 cut(s) 64, 153
BstNSI RCATGY 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 324
BveI ACCTGC 2 cut(s) 5, 244
Cac8I GCNNGC 2 cut(s) 36, 303
Cfr13I GGNCC 3 cut(s) 52, 322, 323
CviAII CATG 3 cut(s) 31, 35, 151
CviJI RGCY 5 cut(s) 71, 136, 170, 262, 324
CviKI_1 RGCY 5 cut(s) 71, 136, 170, 262, 324
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 66, 155
DpnII GATC 2 cut(s) 64, 153
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 3 cut(s) 34, 38, 154
FaiI YATR 8 cut(s) 32, 36, 100, 102, 121, 123, 152, 328
FalI AAGNNNNNCTT 4 cut(s) 193, 225, 261, 293
FatI CATG 3 cut(s) 30, 34, 150
Fnu4HI GCNGC 3 cut(s) 12, 72, 134
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 12, 72, 134
FspBI CTAG 2 cut(s) 176, 263
GluI GCNGC 3 cut(s) 12, 72, 134
HaeIII GGCC 1 cut(s) 324
Hin1II CATG 3 cut(s) 34, 38, 154
HinfI GANTC 3 cut(s) 89, 188, 293
HphI GGTGA 2 cut(s) 29, 198
Hpy166II GTNNAC 2 cut(s) 52, 206
Hpy8I GTNNAC 2 cut(s) 52, 206
HpyCH4III ACNGT 2 cut(s) 116, 229
HpyCH4V TGCA 4 cut(s) 34, 38, 119, 305
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 3 cut(s) 34, 38, 154
Kzo9I GATC 2 cut(s) 64, 153
LpnPI CCDG 2 cut(s) 144, 249
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 2 cut(s) 176, 263
MalI GATC 2 cut(s) 66, 155
MboI GATC 2 cut(s) 64, 153
MhlI GDGCHC 1 cut(s) 326
MnlI CCTC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 2 cut(s) 258, 285
NdeII GATC 2 cut(s) 64, 153
NlaIII CATG 3 cut(s) 34, 38, 154
NlaIV GGNNCC 2 cut(s) 54, 324
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PaqCI CACCTGC 1 cut(s) 5
PfeI GAWTC 3 cut(s) 89, 188, 293
PkrI GCNGC 3 cut(s) 13, 73, 135
PspN4I GGNNCC 2 cut(s) 54, 324
PspOMI GGGCCC 1 cut(s) 322
PspPI GGNCC 3 cut(s) 52, 322, 323
SaqAI TTAA 2 cut(s) 258, 285
SatI GCNGC 3 cut(s) 12, 72, 134
Sau3AI GATC 2 cut(s) 64, 153
Sau96I GGNCC 3 cut(s) 52, 322, 323
SduI GDGCHC 1 cut(s) 326
SetI ASST 6 cut(s) 19, 73, 172, 211, 238, 264
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SphI GCATGC 1 cut(s) 38
SsiI CCGC 2 cut(s) 12, 133
SspMI CTAG 2 cut(s) 176, 263
TaaI ACNGT 2 cut(s) 116, 229
TaqI TCGA 1 cut(s) 186
TauI GCSGC 2 cut(s) 14, 136
TfiI GAWTC 3 cut(s) 89, 188, 293
Tru1I TTAA 2 cut(s) 258, 285
Tru9I TTAA 2 cut(s) 258, 285
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 19, 59, 172
VpaK11BI GGWCC 1 cut(s) 52
XceI RCATGY 1 cut(s) 38
XspI CTAG 2 cut(s) 176, 263
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.