RchiOBHm_Chr7g0213381

Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009053
Physical Location & Seq
Reverse (-)
30491276 .. 30495175
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19099

Sequence Viewer

Length: 2784 bp
ATGAAAATTGCAAGACAAGCTCACTCACTTTTTCCCTCTCAAATACGGTTTCGTTCTGGCGCTCCCAATTCTCTCTCAAAAATTTCTAGGGTTTCAATATTTAAACTCCCCCCACCTCTCCCAATCCAATCTCCCACTCTACCCTTCTTCTCAACCCTCTTCTTCCGATCTCAATCGATTCAACCCTCTCACAGTTCCGGCCAACCGAACCCCTTCAATTTTCCGGCGATGGACGTGAGGCTAACGGAGGGGGCGATACTGAAGATCACGACGGAAGACCATGACAACCAGTATAGGCCCATCCTGCAAGTGCACGACATGAAGCAGATCCAAGCACAGGGCGGCGCCGGCGCGGACAAAGAGCGCTACAGGCTGGCCTTGTCCGATGGGTCCCACACCCAGCAGGGGATGCTTGCCACTCAGCAGAACTTCCTGATTCGGCAGGGCCACCTCCAGAAGGGCTCCGTCGTCTGCCTCAATCAATTCACCTGCACCACCGTCCAAGGCCGCCAGATCATCATTATAATCTCATTGGATGTGCTAGTTGATACATGTGAAATCATTGGAGAGCCTGCCAGAATTTCGAATGCCCAGTCCCCAGGGACAATACCTGCAAATGCTCAATCTCTTAACAGCAGTGCTCGTGTGGCGGGTCATGAAACTATGACTGAGGCGACTCCCCAACAACCTAGATTGAATCAATCGTATGGTGGTTCTTATTCTGGTAGTGCTGACCCAGGAAGATATGCTACAATGAGTACAGTTCCCAATCACCCTAGACCAGAGACTGGTTCTGGTTTTGCTGGGTTAGCACCAGTAAGCGGGTTATATGCTGGTCAGAACACAGGTTTACGCAGCCCCATATCCCAGGCAACATATCAACAGCCACCTCCAAGTTCTTATGCACGCCCACCTCAGCCAACTCATCAACAGCCACCTCCATTATATAGTAACAGAGGACCAGTTGCCAAAAATGAAGCTCCTGGTAGAATAGTACAAATTTGTGCCCTGAATCGGTACCTAAATAAGTGGACAATTAAGGCTAGAGTGACGGCTAAATCAGAACTCAGGTCCTACACCAATGCACGTGGTGAGGGGAAAGTATTTAATTTTGATCTCATTGATTGTGGTGGGGAAATTCGTGTGACCTGCTTTAATTCAATAGCTGAAGAATTCTACAATTTGATTGAAGTTGGTAAGGTGTACTTGATTTCTAAGGGTACAGTAAAGGCAGCTGTAAAGAAATTCAACCACCTTAGTAACGAGTTTGAAATTCAATTGGACACCACTTCGACAATACAGTTATGTTTTGAGGATGATGGCTCGATTCCACAGCAGCGGTTCAATTTTCGGCCAATAAGTGATGTTGAAGGTTTGGAGAACAACACTATTGTGGATATAATAGGTGTGGTAACATTCATCAGTCCTGCTGCTTCAATAAGCACGAAAAACGGTGAGACACAAAAGAGAACTCTCCAGTTGAAGGATATGTCTTGTCGTAGCGTTGAAGTAACTCTGTGGGGCAATTTGTGCAATGCAGAAGGGCAAAAACTTCAAAGTATGTGCGATTCTGGGTTATTTCCAGTGCTAGCTGTTAAAGCTGTTAGAGTCAATGACTTCAATGGCAAGGGGGTGGGGACCATGGCTACTAGTCAACTCTTTATAGAGCCCAATAACTCTCAAGCTGATGAGGTGAGGGAATGGTTTGACAGGGAAGGAAGGAATTCCCCATGTGTCTCTATCTCCAGGGGGACAGCAAGTGTGGGGAGAAATGATATCCGAAAGACTATATCCCAGATTAAAGATGAGAAGCTAGGGACTTCTGAGAAGCCAGATTGGATCACAATCAGTGCTACTGTCATATTTGTAAAGAGTGATAGCTACTTCTATGCAGCATGCCCACTCAAGATAGGGGAGCGGCAATGCAACAAAAAGGTTATAAATGATGGAGACGGGACATGGCGGTGTGAAAGATGTGAGCAGTCCGTAGAACAGTGTGACTACAGATATATACTCAACTTACAGATACAAGACCATACTGGCATAGCATGGGTAACTGCATTTCAGGAGGCTGGTGAAGAAATAATGGGTATAACTGCAAAAGATTTTCATAATTTGAAATATGAAATGCAGGATGAAGATAAAGTTGCAGAAATCGTTCGAAGGGTCTTGTTTACTGAATTTGTTTTCAAGTTGAAAATAAAGGAGGAGACTTTTAGTGATGAGCAGCGTGTGAAATCAACAATTGTCAAAGCAGATAAAGTTAGTTTCTCTTCAAAATCTAGATTTCATTTAGATCTGATGGATAGACTTAAAAATGGGGAAACTGCAATACCTTGTGCCGGGATGAACAATACTGAAGTCGGGAGTTCTGCAATTAGACAACATACACCAGCTGTGAATGCTAGTTACGGTACCAATGCTGTCAATGCTGGTAGAGAGTTTGGAGCACCAGCAAATCAAGTACATGTTGGAAGCCAGTATATTAGTCCTAGGGTTCCTTCAACTGGCTCTGCTGGTTTGTATCCTACCTGTAACATCTGTGGAGGTACAAGCCATAATTCTTTGAACTGCCCAAATGTTATGAATGGCCCAGGACAGTCATCAGGAGGGGGTTACACCAATAGTAGGCCAGTTGCCAGTAATTCTGGTGAATGCTATAAATGTCACCAACCTGGGCACCGGGCGAAAGACTGTCCTAGCTCGAACCATATTCCAGCTTATGGAAGGAGTGGAGCCCAGCCGGGCAGATATGGAGTTTCAAATCAAAGGGTCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
REPA_OB_2 Rep-A_N Rep_fac-A_C tRNA_anti-codon zf-CCHC

Protein Analysis

927

Amino Acids

101.6

Weight (kDa)

8.75

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep-A_N PF04057 81 - 182 5e-26 Replication factor-A protein 1, N-terminal domain
tRNA_anti-codon PF01336 344 - 427 3.3e-10 OB-fold nucleic acid binding domain
REPA_OB_2 PF16900 453 - 555 8e-26 Replication protein A OB domain
Rep_fac-A_C PF08646 613 - 762 1.3e-49 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 524, 1940
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 3 cut(s) 497, 619, 1157
Acc65I GGTACC 2 cut(s) 1017, 2414
AccB1I GGYRCC 4 cut(s) 344, 1017, 2414, 2679
AccB7I CCANNNNNTGG 2 cut(s) 788, 2723
AccBSI CCGCTC 1 cut(s) 1918
AccII CGCG 1 cut(s) 353
AciI CCGC 8 cut(s) 342, 353, 508, 650, 822, 1339, 1918, 1963
AclWI GGATC 2 cut(s) 322, 1847
AcoI YGGCCR 2 cut(s) 199, 1352
AcsI RAATTY 9 cut(s) 81, 579, 999, 1137, 1172, 1244, 1272, 1723, 2180
AcuI CTGAAG 3 cut(s) 281, 1188, 2379
AcvI CACGTG 1 cut(s) 1088
AcyI GRCGYC 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 1091
AfaI GTAC 8 cut(s) 760, 996, 1019, 1205, 1222, 2416, 2466, 2551
AfeI AGCGCT 1 cut(s) 365
AflIII ACRYGT 2 cut(s) 551, 2467
AhlI ACTAGT 1 cut(s) 1649
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 7 cut(s) 598, 736, 867, 982, 1745, 2593, 2674
AleI CACNNNNGTG 1 cut(s) 1391
Alw21I GWGCWC 3 cut(s) 315, 643, 2452
Alw26I GTCTC 5 cut(s) 779, 1451, 1741, 1944, 2204
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 2 cut(s) 322, 1847
AlwNI CAGNNNCTG 1 cut(s) 788
Aor51HI AGCGCT 1 cut(s) 365
AoxI GGCC 8 cut(s) 199, 296, 375, 445, 505, 1352, 2590, 2630
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 855, 1232, 1336, 1430, 1892, 2227
ApoI RAATTY 9 cut(s) 81, 579, 999, 1137, 1172, 1244, 1272, 1723, 2180
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
Asp700I GAANNNNTTC 3 cut(s) 212, 1723, 2157
Asp718I GGTACC 2 cut(s) 1017, 2414
AspA2I CCTAGG 1 cut(s) 2492
AspLEI GCGC 4 cut(s) 62, 347, 353, 366
AspS9I GGNCC 7 cut(s) 297, 390, 445, 959, 1071, 1638, 2591
AsuC2I CCSGG 3 cut(s) 2344, 2684, 2745
AsuHPI GGTGA 8 cut(s) 478, 764, 1103, 1466, 1705, 2087, 2660, 2663
AsuII TTCGAA 2 cut(s) 584, 2161
AsuNHI GCTAGC 1 cut(s) 1588
AvaII GGWCC 4 cut(s) 390, 959, 1071, 1638
AvrII CCTAGG 1 cut(s) 2492
BaeGI GKGCMC 3 cut(s) 315, 1009, 2682
BanI GGYRCC 4 cut(s) 344, 1017, 2414, 2679
BanII GRGCYC 3 cut(s) 464, 1671, 2740
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
BauI CACGAG 1 cut(s) 642
BbrPI CACGTG 1 cut(s) 1088
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 3 cut(s) 315, 643, 2452
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 6 cut(s) 867, 1244, 1348, 1417, 1904, 2239
BccI CCATC 6 cut(s) 223, 308, 380, 1313, 1940, 2296
BceAI ACGGC 1 cut(s) 1068
BciT130I CCWGG 7 cut(s) 600, 738, 869, 984, 1747, 2595, 2676
BciVI GTATCC 1 cut(s) 2535
BcnI CCSGG 3 cut(s) 2344, 2684, 2745
BcoDI GTCTC 5 cut(s) 779, 1451, 1741, 1944, 2204
BcuI ACTAGT 1 cut(s) 1649
BfmI CTRYAG 2 cut(s) 367, 2002
BfoI RGCGCY 3 cut(s) 63, 348, 367
BfuAI ACCTGC 3 cut(s) 497, 619, 1157
BfuI GTATCC 1 cut(s) 2535
BglII AGATCT 1 cut(s) 2296
BisI GCNGC 9 cut(s) 343, 508, 856, 1233, 1337, 1431, 1893, 1919, 2228
BlnI CCTAGG 1 cut(s) 2492
BlsI GCNGC 9 cut(s) 344, 509, 857, 1234, 1338, 1432, 1894, 1920, 2229
Bme18I GGWCC 4 cut(s) 390, 959, 1071, 1638
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 7 cut(s) 297, 390, 445, 959, 1071, 1638, 2591
BmrI ACTGGG 1 cut(s) 586
BmsI GCATC 1 cut(s) 399
BmtI GCTAGC 1 cut(s) 1592
BmuI ACTGGG 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 3 cut(s) 437, 1460, 1729
Bpu10I CCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 2 cut(s) 584, 2161
BpuEI CTTGAG 2 cut(s) 1665, 1889
BpuMI CCSGG 3 cut(s) 2344, 2684, 2745
Bsa29I ATCGAT 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 1088
BsaBI GATNNNNATC 2 cut(s) 172, 1844
BsaHI GRCGYC 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 347
Bse3DI GCAATG 2 cut(s) 1540, 1928
Bse8I GATNNNNATC 2 cut(s) 172, 1844
BseBI CCWGG 7 cut(s) 600, 738, 869, 984, 1747, 2595, 2676
BseCI ATCGAT 1 cut(s) 176
BseGI GGATG 6 cut(s) 300, 414, 541, 1321, 2140, 2352
BseJI GATNNNNATC 2 cut(s) 172, 1844
BseMI GCAATG 2 cut(s) 1540, 1928
BseMII CTCAG 5 cut(s) 434, 660, 929, 1081, 1815
BseRI GAGGAG 1 cut(s) 2222
BseSI GKGCMC 3 cut(s) 315, 1009, 2682
BseXI GCAGC 6 cut(s) 867, 1244, 1348, 1417, 1904, 2239
BseYI CCCAGC 3 cut(s) 399, 803, 2739
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 8 cut(s) 201, 298, 377, 447, 507, 1354, 2592, 2632
BshNI GGYRCC 4 cut(s) 344, 1017, 2414, 2679
BshVI ATCGAT 1 cut(s) 176
BsiHKAI GWGCWC 3 cut(s) 315, 643, 2452
BsiSI CCGG 6 cut(s) 198, 224, 348, 2343, 2683, 2744
BslFI GGGAC 7 cut(s) 376, 580, 616, 1651, 1765, 1831, 1969
BsmAI GTCTC 5 cut(s) 779, 1451, 1741, 1944, 2204
BsmBI CGTCTC 1 cut(s) 1944
BsmFI GGGAC 7 cut(s) 376, 580, 616, 1651, 1765, 1831, 1969
BsmI GAATGC 3 cut(s) 592, 2407, 2660
BsnI GGCC 8 cut(s) 201, 298, 377, 447, 507, 1354, 2592, 2632
Bsp119I TTCGAA 2 cut(s) 584, 2161
Bsp1286I GDGCHC 8 cut(s) 315, 464, 643, 1009, 1671, 2452, 2682, 2740
Bsp143I GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
Bsp19I CCATGG 1 cut(s) 1641
BspACI CCGC 8 cut(s) 342, 353, 508, 650, 822, 1339, 1918, 1963
BspANI GGCC 8 cut(s) 201, 298, 377, 447, 507, 1354, 2592, 2632
BspCNI CTCAG 5 cut(s) 433, 661, 928, 1080, 1816
BspDI ATCGAT 1 cut(s) 176
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 655
BspMI ACCTGC 3 cut(s) 497, 619, 1157
BspOI GCTAGC 1 cut(s) 1592
BspPI GGATC 2 cut(s) 322, 1847
BspT104I TTCGAA 2 cut(s) 584, 2161
BspT107I GGYRCC 4 cut(s) 344, 1017, 2414, 2679
BsrBI CCGCTC 1 cut(s) 1918
BsrDI GCAATG 2 cut(s) 1540, 1928
BsrFI RCCGGY 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 347
BssMI GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
BssNI GRCGYC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 3 cut(s) 502, 1641, 2492
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 7 cut(s) 600, 738, 869, 984, 1747, 2595, 2676
Bst6I CTCTTC 2 cut(s) 164, 2278
BstACI GRCGYC 1 cut(s) 345
BstAPI GCANNNNNTGC 2 cut(s) 409, 1530
BstBAI YACGTR 1 cut(s) 1088
BstBI TTCGAA 2 cut(s) 584, 2161
BstC8I GCNNGC 7 cut(s) 349, 375, 414, 573, 907, 1590, 1897
BstDEI CTNAG 7 cut(s) 420, 669, 915, 1067, 1215, 1256, 1824
BstDSI CCRYGG 1 cut(s) 1641
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 6 cut(s) 300, 414, 541, 1321, 2140, 2352
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 3 cut(s) 63, 348, 367
BstHHI GCGC 4 cut(s) 62, 347, 353, 366
BstKTI GATC 7 cut(s) 170, 267, 330, 516, 1117, 1842, 2299
BstMAI GTCTC 5 cut(s) 779, 1451, 1741, 1944, 2204
BstMBI GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
BstNI CCWGG 7 cut(s) 600, 738, 869, 984, 1747, 2595, 2676
BstNSI RCATGY 3 cut(s) 555, 1899, 2471
BstSFI CTRYAG 2 cut(s) 367, 2002
BstSLI GKGCMC 3 cut(s) 315, 1009, 2682
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 6 cut(s) 867, 1244, 1348, 1417, 1904, 2239
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 327, 2296
BstYI RGATCY 2 cut(s) 327, 2296
Bsu15I ATCGAT 1 cut(s) 176
BsuI GTATCC 1 cut(s) 2535
BsuRI GGCC 8 cut(s) 201, 298, 377, 447, 507, 1354, 2592, 2632
BsuTUI ATCGAT 1 cut(s) 176
BtgI CCRYGG 1 cut(s) 1641
BtgZI GCGATG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 6 cut(s) 300, 414, 541, 1321, 2140, 2352
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 4 cut(s) 643, 1590, 1855, 2000
BveI ACCTGC 3 cut(s) 497, 619, 1157
Cac8I GCNNGC 7 cut(s) 349, 375, 414, 573, 907, 1590, 1897
CaiI CAGNNNCTG 1 cut(s) 788
CciI TCATGA 1 cut(s) 655
CfoI GCGC 4 cut(s) 62, 347, 353, 366
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 7 cut(s) 297, 390, 445, 959, 1071, 1638, 2591
ClaI ATCGAT 1 cut(s) 176
Csp6I GTAC 8 cut(s) 759, 995, 1018, 1204, 1221, 2415, 2465, 2550
CspCI CAANNNNNGTGG 2 cut(s) 1069, 1104
CviQI GTAC 8 cut(s) 759, 995, 1018, 1204, 1221, 2415, 2465, 2550
DdeI CTNAG 7 cut(s) 420, 669, 915, 1067, 1215, 1256, 1824
DinI GGCGCC 1 cut(s) 346
DpnI GATC 7 cut(s) 169, 266, 329, 515, 1116, 1841, 2298
DpnII GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
DraI TTTAAA 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 1091
EaeI YGGCCR 2 cut(s) 199, 1352
Eam1104I CTCTTC 2 cut(s) 164, 2278
EarI CTCTTC 2 cut(s) 164, 2278
Eco130I CCWWGG 3 cut(s) 502, 1641, 2492
Eco24I GRGCYC 3 cut(s) 464, 1671, 2740
Eco32I GATATC 1 cut(s) 1777
Eco47I GGWCC 4 cut(s) 390, 959, 1071, 1638
Eco47III AGCGCT 1 cut(s) 365
Eco57I CTGAAG 3 cut(s) 281, 1188, 2379
Eco72I CACGTG 1 cut(s) 1088
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO109I RGGNCCY 2 cut(s) 390, 1071
EcoRI GAATTC 2 cut(s) 1172, 1723
EcoRII CCWGG 7 cut(s) 598, 736, 867, 982, 1745, 2593, 2674
EcoRV GATATC 1 cut(s) 1777
EcoT14I CCWWGG 3 cut(s) 502, 1641, 2492
EcoT38I GRGCYC 3 cut(s) 464, 1671, 2740
EgeI GGCGCC 1 cut(s) 346
EheI GGCGCC 1 cut(s) 346
ErhI CCWWGG 3 cut(s) 502, 1641, 2492
Esp3I CGTCTC 1 cut(s) 1944
FalI AAGNNNNNCTT 2 cut(s) 1190, 1222
FaqI GGGAC 7 cut(s) 376, 580, 616, 1651, 1765, 1831, 1969
FauI CCCGC 2 cut(s) 643, 815
Fnu4HI GCNGC 9 cut(s) 343, 508, 856, 1233, 1337, 1431, 1893, 1919, 2228
FokI GGATG 6 cut(s) 287, 421, 548, 1328, 2147, 2359
FriOI GRGCYC 3 cut(s) 464, 1671, 2740
Fsp4HI GCNGC 9 cut(s) 343, 508, 856, 1233, 1337, 1431, 1893, 1919, 2228
GlaI GCGC 4 cut(s) 61, 346, 352, 365
GluI GCNGC 9 cut(s) 343, 508, 856, 1233, 1337, 1431, 1893, 1919, 2228
GsaI CCCAGC 3 cut(s) 403, 807, 2743
GsuI CTGGAG 3 cut(s) 437, 1460, 1729
HaeII RGCGCY 3 cut(s) 63, 348, 367
HaeIII GGCC 8 cut(s) 201, 298, 377, 447, 507, 1354, 2592, 2632
HapII CCGG 6 cut(s) 198, 224, 348, 2343, 2683, 2744
HhaI GCGC 4 cut(s) 62, 347, 353, 366
Hin1I GRCGYC 1 cut(s) 345
Hin6I GCGC 4 cut(s) 60, 345, 351, 364
HinP1I GCGC 4 cut(s) 60, 345, 351, 364
HincII GTYRAC 1 cut(s) 1655
HindII GTYRAC 1 cut(s) 1655
HinfI GANTC 8 cut(s) 178, 436, 676, 697, 1012, 1327, 1568, 1608
HpaII CCGG 6 cut(s) 198, 224, 348, 2343, 2683, 2744
HphI GGTGA 8 cut(s) 478, 764, 1103, 1466, 1705, 2087, 2660, 2663
Hpy166II GTNNAC 6 cut(s) 313, 851, 1032, 1204, 1655, 2175
Hpy188I TCNGA 7 cut(s) 167, 385, 840, 1063, 1781, 1825, 2301
Hpy188III TCNNGA 9 cut(s) 268, 433, 454, 656, 1906, 2066, 2283, 2365, 2607
Hpy8I GTNNAC 6 cut(s) 313, 851, 1032, 1204, 1655, 2175
Hpy99I CGWCG 2 cut(s) 274, 470
HpyCH4IV ACGT 2 cut(s) 234, 1087
HpyF3I CTNAG 7 cut(s) 420, 669, 915, 1067, 1215, 1256, 1824
HpySE526I ACGT 2 cut(s) 234, 1087
Hsp92I GRCGYC 1 cut(s) 345
HspAI GCGC 4 cut(s) 60, 345, 351, 364
KasI GGCGCC 1 cut(s) 344
KflI GGGWCCC 1 cut(s) 390
KpnI GGTACC 2 cut(s) 1021, 2418
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Kzo9I GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
LmnI GCTCC 6 cut(s) 67, 467, 985, 1915, 2447, 2735
Lsp1109I GCAGC 6 cut(s) 867, 1244, 1348, 1417, 1904, 2239
LweI GCATC 1 cut(s) 399
MaeII ACGT 2 cut(s) 234, 1087
MalI GATC 7 cut(s) 169, 266, 329, 515, 1116, 1841, 2298
MbiI CCGCTC 1 cut(s) 1918
MboI GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
MfeI CAATTG 2 cut(s) 1277, 2244
MflI RGATCY 2 cut(s) 327, 2296
MhlI GDGCHC 8 cut(s) 315, 464, 643, 1009, 1671, 2452, 2682, 2740
Mly113I GGCGCC 1 cut(s) 345
MlyI GAGTC 2 cut(s) 670, 1617
MmeI TCCRAC 1 cut(s) 2452
MreI CGCCGGCG 1 cut(s) 347
MroNI GCCGGC 1 cut(s) 347
MroXI GAANNNNTTC 3 cut(s) 212, 1723, 2157
MseI TTAA 8 cut(s) 102, 630, 1038, 1107, 1155, 1596, 1800, 2313
MslI CAYNNNNRTG 2 cut(s) 1391, 1963
MspA1I CMGCKG 3 cut(s) 1235, 1339, 2396
MspI CCGG 6 cut(s) 198, 224, 348, 2343, 2683, 2744
MunI CAATTG 2 cut(s) 1277, 2244
Mva1269I GAATGC 3 cut(s) 592, 2407, 2660
MvaI CCWGG 7 cut(s) 600, 738, 869, 984, 1747, 2595, 2676
MvnI CGCG 1 cut(s) 353
NaeI GCCGGC 1 cut(s) 349
NarI GGCGCC 1 cut(s) 345
NciI CCSGG 3 cut(s) 2344, 2684, 2745
NcoI CCATGG 1 cut(s) 1641
NdeII GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
NgoMIV GCCGGC 1 cut(s) 347
NheI GCTAGC 1 cut(s) 1588
NmuCI GTSAC 4 cut(s) 1048, 1144, 1997, 2666
NspI RCATGY 3 cut(s) 555, 1899, 2471
NspV TTCGAA 2 cut(s) 584, 2161
OliI CACNNNNGTG 1 cut(s) 1391
PaeI GCATGC 1 cut(s) 1899
PagI TCATGA 1 cut(s) 655
PaqCI CACCTGC 1 cut(s) 497
PasI CCCWGGG 1 cut(s) 599
PciI ACATGT 2 cut(s) 551, 2467
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 3 cut(s) 592, 2407, 2660
PdiI GCCGGC 1 cut(s) 349
PdmI GAANNNNTTC 3 cut(s) 212, 1723, 2157
PfeI GAWTC 6 cut(s) 178, 436, 697, 1012, 1327, 1568
PflMI CCANNNNNTGG 2 cut(s) 788, 2723
PkrI GCNGC 9 cut(s) 344, 509, 857, 1234, 1338, 1432, 1894, 1920, 2229
PleI GAGTC 2 cut(s) 670, 1616
PluTI GGCGCC 1 cut(s) 348
PmaCI CACGTG 1 cut(s) 1088
PmlI CACGTG 1 cut(s) 1088
PpsI GAGTC 2 cut(s) 670, 1616
Ppu21I YACGTR 1 cut(s) 1088
PpuMI RGGWCCY 2 cut(s) 390, 1071
PscI ACATGT 2 cut(s) 551, 2467
PsiI TTATAA 2 cut(s) 524, 1940
Psp5II RGGWCCY 2 cut(s) 390, 1071
Psp6I CCWGG 7 cut(s) 598, 736, 867, 982, 1745, 2593, 2674
PspCI CACGTG 1 cut(s) 1088
PspFI CCCAGC 3 cut(s) 399, 803, 2739
PspGI CCWGG 7 cut(s) 598, 736, 867, 982, 1745, 2593, 2674
PspPI GGNCC 7 cut(s) 297, 390, 445, 959, 1071, 1638, 2591
PspPPI RGGWCCY 2 cut(s) 390, 1071
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 2 cut(s) 327, 2296
PvuII CAGCTG 2 cut(s) 1235, 2396
RsaI GTAC 8 cut(s) 760, 996, 1019, 1205, 1222, 2416, 2466, 2551
RsaNI GTAC 8 cut(s) 759, 995, 1018, 1204, 1221, 2415, 2465, 2550
RseI CAYNNNNRTG 2 cut(s) 1391, 1963
SaqAI TTAA 8 cut(s) 102, 630, 1038, 1107, 1155, 1596, 1800, 2313
SatI GCNGC 9 cut(s) 343, 508, 856, 1233, 1337, 1431, 1893, 1919, 2228
Sau3AI GATC 7 cut(s) 167, 264, 327, 513, 1114, 1839, 2296
Sau96I GGNCC 7 cut(s) 297, 390, 445, 959, 1071, 1638, 2591
SchI GAGTC 2 cut(s) 670, 1617
SduI GDGCHC 8 cut(s) 315, 464, 643, 1009, 1671, 2452, 2682, 2740
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 2 cut(s) 367, 2002
SfoI GGCGCC 1 cut(s) 346
SfuI TTCGAA 2 cut(s) 584, 2161
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 4 cut(s) 390, 959, 1071, 1638
SmiMI CAYNNNNRTG 2 cut(s) 1391, 1963
SmlI CTYRAG 2 cut(s) 1680, 1904
SmoI CTYRAG 2 cut(s) 1680, 1904
SpeI ACTAGT 1 cut(s) 1649
SphI GCATGC 1 cut(s) 1899
SsiI CCGC 8 cut(s) 342, 353, 508, 650, 822, 1339, 1918, 1963
SspDI GGCGCC 1 cut(s) 344
SspI AATATT 1 cut(s) 99
StyI CCWWGG 3 cut(s) 502, 1641, 2492
TaiI ACGT 2 cut(s) 237, 1090
TaqI TCGA 6 cut(s) 176, 584, 1292, 1325, 2161, 2705
TatI WGTACW 4 cut(s) 758, 994, 1203, 2464
TauI GCSGC 3 cut(s) 345, 510, 1921
TfiI GAWTC 6 cut(s) 178, 436, 697, 1012, 1327, 1568
Tru1I TTAA 8 cut(s) 102, 630, 1038, 1107, 1155, 1596, 1800, 2313
Tru9I TTAA 8 cut(s) 102, 630, 1038, 1107, 1155, 1596, 1800, 2313
TscAI CASTG 4 cut(s) 643, 1590, 1855, 2000
TseFI GTSAC 4 cut(s) 1048, 1144, 1997, 2666
TseI GCWGC 6 cut(s) 855, 1232, 1336, 1430, 1892, 2227
Tsp45I GTSAC 4 cut(s) 1048, 1144, 1997, 2666
TspGWI ACGGA 4 cut(s) 260, 287, 454, 1975
TspRI CASTG 4 cut(s) 643, 1590, 1855, 2000
Van91I CCANNNNNTGG 2 cut(s) 788, 2723
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 4 cut(s) 390, 959, 1071, 1638
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 9 cut(s) 81, 579, 999, 1137, 1172, 1244, 1272, 1723, 2180
XbaI TCTAGA 1 cut(s) 2282
XceI RCATGY 3 cut(s) 555, 1899, 2471
XmaJI CCTAGG 1 cut(s) 2492
XmnI GAANNNNTTC 3 cut(s) 212, 1723, 2157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.