RchiOBHm_Chr7g0215581

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008904
Physical Location & Seq
Forward (+)
33277168 .. 33278164
997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19288

Sequence Viewer

Length: 201 bp
ATGTCGTGGCTTCCCTCCGCCGTCGCTCTCAATTGCATCGACGACTTCGCCATGAAGCAAGACCACTTCTCCGGCGTCGCCGCCGTCGAGCACGTCCCGCTCAGCCACTTGGCCGACGGCAGGATCGACTCCGCCTCGGCTGTGGTCCTCCAATCATTCGCGTACCTCCCACGCGCCGCCCAGCGTCGGCTACCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

66

Amino Acids

7.15

Weight (kDa)

6.22

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 100
AccII CGCG 2 cut(s) 161, 174
AciI CCGC 5 cut(s) 18, 81, 98, 132, 177
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 2 cut(s) 120, 186
AjiI CACGTC 1 cut(s) 94
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 93
BceAI ACGGC 3 cut(s) 5, 68, 133
BisI GCNGC 2 cut(s) 81, 177
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 82, 178
Bme18I GGWCC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 145
BmsI GCATC 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 186
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 120, 186
BseMII CTCAG 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 2 cut(s) 161, 174
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 2 cut(s) 120, 186
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 123
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 5 cut(s) 18, 81, 98, 132, 177
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 2 cut(s) 161, 174
BspPI GGATC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 101, 198
BstFNI CGCG 2 cut(s) 161, 174
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstUI CGCG 2 cut(s) 161, 174
BsuRI GGCC 1 cut(s) 113
BtrI CACGTC 1 cut(s) 94
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 2 cut(s) 64, 173
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 52
CviJI RGCY 5 cut(s) 10, 105, 113, 140, 190
CviKI_1 RGCY 5 cut(s) 10, 105, 113, 140, 190
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 101, 198
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 111
EciI GGCGGA 2 cut(s) 7, 121
Eco47I GGWCC 1 cut(s) 145
FaeI CATG 1 cut(s) 55
FaiI YATR 1 cut(s) 53
FaqI GGGAC 1 cut(s) 80
FatI CATG 1 cut(s) 51
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 81, 177
Fsp4HI GCNGC 2 cut(s) 81, 177
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 81, 177
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 72
HgaI GACGC 2 cut(s) 64, 173
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 72
Hpy99I CGWCG 6 cut(s) 26, 44, 80, 89, 119, 189
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 101, 198
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 3 cut(s) 85, 106, 194
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 125
MbiI CCGCTC 1 cut(s) 100
MboI GATC 1 cut(s) 123
MfeI CAATTG 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 31
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 25, 145, 158, 176
MspI CCGG 1 cut(s) 72
MunI CAATTG 1 cut(s) 31
MvnI CGCG 2 cut(s) 161, 174
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 116
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 123
PkrI GCNGC 2 cut(s) 82, 178
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SatI GCNGC 2 cut(s) 81, 177
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 96, 168, 196
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 31
SsiI CCGC 5 cut(s) 18, 81, 98, 132, 177
TaiI ACGT 1 cut(s) 96
TaqI TCGA 3 cut(s) 39, 87, 126
TasI AATT 1 cut(s) 31
TauI GCSGC 2 cut(s) 83, 179
TspDTI ATGAA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.