Rroxscaffold_3G00221460

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008904
Physical Location & Seq
Forward (+)
4218277 .. 4218768
492 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00221460.1

Sequence Viewer

Length: 372 bp
ATGGAGCAAGATCGCTTGTCCGGCGTCGCCGCCGTTGAGCACATCCCGCTAGCCGACGGAAGGGTCGAGTTTGCCTTTGGTTATGCTCCTCCAATCCCTCGCCGTAGTCCCATACCCCCAAGCTCCTCCCGGCGTCGGCTACGTCCTTACCAGTTCATCCTCTGCCTCAGCTCCGTTGACCGCGCCACCGACTTCACTCTCGTTGCCGACCTCGGTTGTCAATCTCTCGACGCATTTCGAAGGCCAAATTTCCAGCGTTACGCTACGAAAGTTTTAGTCTTGCAGATGCAAAACACCGTTATTCATTTACTTGTTCATGTTTTGCTTGTTCTTCCCGATTTGACATTTTGTCGAACACTTGGTGTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

123

Amino Acids

13.89

Weight (kDa)

9.41

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 30, 47, 181
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 24, 133
AdeI CACNNNGTG 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 60, 135
AhdI GACNNNNNGTC 1 cut(s) 348
AluBI AGCT 2 cut(s) 123, 171
AluI AGCT 2 cut(s) 123, 171
Alw21I GWGCWC 1 cut(s) 42
AoxI GGCC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 247
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 130
AsuII TTCGAA 1 cut(s) 238
AsuNHI GCTAGC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 167
BceAI ACGGC 2 cut(s) 17, 87
BcnI CCSGG 1 cut(s) 130
BfaI CTAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 130
BmeRI GACNNNNNGTC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 276
BmtI GCTAGC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 130
BsaHI GRCGYC 2 cut(s) 24, 133
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 135
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 42, 156
BseLI CCNNNNNNNGG 2 cut(s) 60, 135
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 78, 115
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 2 cut(s) 21, 130
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 60, 135
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 1 cut(s) 244
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 3 cut(s) 30, 47, 181
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 1 cut(s) 10
BssNI GRCGYC 2 cut(s) 24, 133
Bst4CI ACNGT 1 cut(s) 298
BstACI GRCGYC 2 cut(s) 24, 133
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 42, 156
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 21, 46
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 183
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 2 cut(s) 42, 156
Cac8I GCNNGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 185
CseI GACGC 3 cut(s) 13, 122, 239
CviAII CATG 1 cut(s) 317
CviJI RGCY 5 cut(s) 53, 123, 139, 171, 244
CviKI_1 RGCY 5 cut(s) 53, 123, 139, 171, 244
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 362
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1105I GACNNNNNGTC 1 cut(s) 348
FaeI CATG 1 cut(s) 320
FaiI YATR 3 cut(s) 84, 113, 318
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 316
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 29, 143
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 244
HapII CCGG 2 cut(s) 21, 130
HgaI GACGC 3 cut(s) 13, 122, 239
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 24, 133
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HpaII CCGG 2 cut(s) 21, 130
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 227, 335
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 4 cut(s) 29, 59, 138, 233
HpyAV CCTTC 2 cut(s) 54, 234
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 283, 289, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 46
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 2 cut(s) 24, 133
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 4 cut(s) 4, 91, 128, 176
LpnPI CCDG 4 cut(s) 34, 143, 164, 266
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 247
MnlI CCTC 6 cut(s) 99, 108, 136, 170, 176, 221
MspI CCGG 2 cut(s) 21, 130
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 21, 46
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 49
NlaIII CATG 1 cut(s) 320
NspV TTCGAA 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 31
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 42
SetI ASST 4 cut(s) 125, 145, 173, 213
SfaNI GCATC 1 cut(s) 276
SfuI TTCGAA 1 cut(s) 238
Sse9I AATT 1 cut(s) 247
SsiI CCGC 3 cut(s) 30, 47, 181
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 66, 228, 238, 352
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 32
TspDTI ATGAA 3 cut(s) 145, 293, 305
TspGWI ACGGA 2 cut(s) 72, 163
XapI RAATTY 1 cut(s) 247
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.