Rorug06G0183400

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008904
Physical Location & Seq
Reverse (-)
29031164 .. 29031556
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0183400.1

Sequence Viewer

Length: 393 bp
ATGGAGTTCAGGTCTAAAGTAGACGATGCATGGTACGCCGTCAAAATTTTGACGGAGGGCGATGGTGGGGAATGGTTGAGAGTGAAGTTCGACGACTTCAAAGACGAGGACGATGAGGTGTACAAGGTCAAGGACCTGACATCCATTAACCACGTGATGAAGTTCCGATCAAGGTTCAGGGCTGTGTCTATTCAGGTGCAAGACTCAGAATGCCCGAACGTGGTGGAGGGCACGCTCGTGTGTGCTGCCGTTTCAGTTTTACCCAACGATTGTCGCTTCTATGATGCTGTTGTTAACCAGGTGAAGATTTTTATACTCATTATTCTCACTATTATTGTTTTCTCAAACTTTGATGAACAACAAGTAACCATTGATTGTGATTTCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

130

Amino Acids

14.99

Weight (kDa)

4.57

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAWADEE PF16719 1 - 102 4e-22 SAWADEE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 45
AcvI CACGTG 1 cut(s) 154
AfaI GTAC 2 cut(s) 35, 122
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 2 cut(s) 100, 385
AjnI CCWGG 1 cut(s) 297
AleI CACNNNNGTG 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 233
BauI CACGAG 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 154
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 56
BceAI ACGGC 2 cut(s) 23, 233
BciT130I CCWGG 1 cut(s) 299
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 16, 274
BsaAI YACGTR 1 cut(s) 154
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 219
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 220
BsmI GAATGC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 120
BssMI GATC 1 cut(s) 167
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 1 cut(s) 170
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 297
Csp6I GTAC 2 cut(s) 34, 121
CviAII CATG 1 cut(s) 30
CviJI RGCY 1 cut(s) 182
CviKI_1 RGCY 1 cut(s) 182
CviQI GTAC 2 cut(s) 34, 121
DdeI CTNAG 1 cut(s) 205
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 1 cut(s) 33
FaiI YATR 4 cut(s) 31, 282, 314, 391
FatI CATG 1 cut(s) 29
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 33
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 203
HpaI GTTAAC 1 cut(s) 295
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 22, 121, 295
Hpy188I TCNGA 2 cut(s) 167, 208
Hpy8I GTNNAC 3 cut(s) 22, 121, 295
Hpy99I CGWCG 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 153, 219
HpyCH4V TGCA 2 cut(s) 29, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 153, 219
Hsp92II CATG 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 5 cut(s) 149, 163, 179, 284, 311
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 2 cut(s) 16, 274
MabI ACCWGGT 1 cut(s) 297
MaeII ACGT 2 cut(s) 153, 219
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 45
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 4 cut(s) 49, 100, 109, 220
Mph1103I ATGCAT 1 cut(s) 31
MseI TTAA 2 cut(s) 147, 294
MslI CAYNNNNRTG 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 167
NlaIII CATG 1 cut(s) 33
NsiI ATGCAT 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 236
PctI GAATGC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 197
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 297
PspCI CACGTG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 297
PspPI GGNCC 1 cut(s) 133
PspPPI RGGWCCY 1 cut(s) 133
RsaI GTAC 2 cut(s) 35, 122
RsaNI GTAC 2 cut(s) 34, 121
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 2 cut(s) 147, 294
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 233
SetI ASST 9 cut(s) 14, 120, 129, 138, 156, 176, 198, 222, 303
SexAI ACCWGGT 1 cut(s) 297
SfaNI GCATC 2 cut(s) 16, 274
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 297
TaiI ACGT 2 cut(s) 156, 222
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 45
TatI WGTACW 1 cut(s) 120
Tru1I TTAA 2 cut(s) 147, 294
Tru9I TTAA 2 cut(s) 147, 294
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 173, 369
TspGWI ACGGA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.