Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000175

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Reverse (-)

61202 .. 62889

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_175G00431950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGTGGCTTCCCTCCACCGTCTCTCTCAATTGCATCGACGACTTCGCCATGAAGCAAGACCATTTCTCCGGCGTCGCCGCAGCCGAGCACGTCCCGCTCAGCCACTTGGCCGACGGCGAGATCGACTCCGCCTCGCTGTGGTCCTCCAATCATTCACTTACCTCCCACGCGCCTCGGCTACGTCCTTACCAGCTCATCCTCTGCCTCGGCTCCGGCGATCGCGCCACTTTACTCCCACTTTCACCGCCCGCCGACCTCGGTTGTCAATCTCCGAAGCATTTCAATGGCCGGATTTCCTGCGTTACGGCTACAAAGTGTCGTGTTGGATCTGGAAATGACGCAGCTGTGGTTGATGGGCTGCTGTTTTTGGTCGTCGGAGCATTTAGGTTTGCAAATGGAGGGGAAAGGTTTAGGAGGAGGAGGAGGAGGAGCGGCTTGAGAGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

150

Amino Acids

16.2

Weight (kDa)

9.04

Isoelectric Point (pI)

57.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	100, 435
AccII	CGCG	2 cut(s)	173, 225
AciI	CCGC	6 cut(s)	81, 98, 132, 248, 252, 435
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	2 cut(s)	111, 289
AcyI	GRCGYC	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	2 cut(s)	196, 347
AluI	AGCT	2 cut(s)	196, 347
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	111, 289
ApeKI	GCWGC	3 cut(s)	83, 344, 361
AsiSI	GCGATCGC	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	175, 227
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	95, 348, 356
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	2 cut(s)	133, 324
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	5 cut(s)	81, 84, 345, 362, 436
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	5 cut(s)	82, 85, 346, 363, 437
Bme18I	GGWCC	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu1102I	GCTNAGC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	176, 208, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	176, 208, 259
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	115
BseRI	GAGGAG	5 cut(s)	433, 436, 439, 442, 445
BseXI	GCAGC	3 cut(s)	95, 348, 356
Bsh1236I	CGCG	2 cut(s)	173, 225
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	113, 291
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	72, 216, 292
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	113, 291
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	123, 220, 329
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	6 cut(s)	81, 98, 132, 248, 252, 435
BspANI	GGCC	2 cut(s)	113, 291
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	173, 225
BspLI	GGNNCC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	337
BsrBI	CCGCTC	2 cut(s)	100, 435
BssECI	CCNNGG	3 cut(s)	176, 208, 259
BssMI	GATC	3 cut(s)	123, 220, 329
BssNI	GRCGYC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	173, 225
BstHHI	GCGC	2 cut(s)	175, 227
BstKTI	GATC	3 cut(s)	126, 223, 332
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	3 cut(s)	123, 220, 329
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstUI	CGCG	2 cut(s)	173, 225
BstV1I	GCAGC	3 cut(s)	95, 348, 356
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	113, 291
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	175, 227
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	2 cut(s)	64, 350
CviAII	CATG	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	125, 222, 331
DpnII	GATC	3 cut(s)	123, 220, 329
EaeI	YGGCCR	2 cut(s)	111, 289
EciI	GGCGGA	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	51
FauI	CCCGC	2 cut(s)	105, 259
Fnu4HI	GCNGC	5 cut(s)	81, 84, 345, 362, 436
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	81, 84, 345, 362, 436
GlaI	GCGC	2 cut(s)	174, 226
GluI	GCNGC	5 cut(s)	81, 84, 345, 362, 436
HaeIII	GGCC	2 cut(s)	113, 291
HapII	CCGG	3 cut(s)	72, 216, 292
HgaI	GACGC	2 cut(s)	64, 350
HhaI	GCGC	2 cut(s)	175, 227
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	2 cut(s)	173, 225
HinP1I	GCGC	2 cut(s)	173, 225
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	3 cut(s)	72, 216, 292
HphI	GGTGA	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	276, 380
Hpy188III	TCNNGA	1 cut(s)	333
Hpy99I	CGWCG	4 cut(s)	44, 80, 119, 380
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	93, 184
HpyCH4V	TGCA	2 cut(s)	36, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	93, 184
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	2 cut(s)	173, 225
Kzo9I	GATC	3 cut(s)	123, 220, 329
LmnI	GCTCC	3 cut(s)	218, 380, 432
LpnPI	CCDG	6 cut(s)	85, 206, 229, 305, 313, 318
Lsp1109I	GCAGC	3 cut(s)	95, 348, 356
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	2 cut(s)	93, 184
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	3 cut(s)	125, 222, 331
MbiI	CCGCTC	2 cut(s)	100, 435
MboI	GATC	3 cut(s)	123, 220, 329
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	307, 358
MroXI	GAANNNNTTC	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	3 cut(s)	72, 216, 292
MunI	CAATTG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	173, 225
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	3 cut(s)	123, 220, 329
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	214
NmeAIII	GCCGAG	3 cut(s)	112, 157, 189
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 123, 216
PdmI	GAANNNNTTC	1 cut(s)	281
PkrI	GCNGC	5 cut(s)	82, 85, 346, 363, 437
Ple19I	CGATCG	1 cut(s)	223
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	329
PvuI	CGATCG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	347
RgaI	GCGATCGC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	5 cut(s)	81, 84, 345, 362, 436
Sau3AI	GATC	3 cut(s)	123, 220, 329
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	8 cut(s)	96, 167, 187, 198, 261, 349, 392, 413
SfaAI	GCGATCGC	1 cut(s)	223
SfaNI	GCATC	1 cut(s)	45
SgfI	GCGATCGC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	6 cut(s)	81, 98, 132, 248, 252, 435
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	96, 187
TaqI	TCGA	2 cut(s)	39, 126
TasI	AATT	1 cut(s)	31
TauI	GCSGC	2 cut(s)	83, 438
TseI	GCWGC	3 cut(s)	83, 344, 361
TspDTI	ATGAA	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.