Rroxscaffold_5G00359610

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008904
Physical Location & Seq
Reverse (-)
39754450 .. 39755112
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359610.1

Sequence Viewer

Length: 366 bp
ATGGAGCAAGGCGCTTGTCCGGCGTCGCGGCGGTCGAGGACGTCCTGCTTAGCCGAGGGAAGGGTCGAGTTTGCCTTTGGCTGTGCTCCTCCAATCCCTCGCGTAGTCCCGTACCTCCCAAGAGCCTCCCGGCGTCGGCTACGACTTCACCAGTTCATCCTCTGCCTCGGCTCCGTCGACCGCGCCACCGACTCCACTCTCGTTGCCGACCTTGGTTGTCAATCTCGACACATTTCGACGACCAAATTTCCGGTGTTATGGCTACGAAGACTTAAAATGGAAGTTCATGTGGGCAATATAATGAATGTTCATGGGGATTTTCTTAACACCTTTCCAATAGTATCGCTAAATTGTAATGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

121

Amino Acids

13.58

Weight (kDa)

9.68

Isoelectric Point (pI)

78.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 177
AccII CGCG 3 cut(s) 28, 102, 183
AciI CCGC 3 cut(s) 28, 31, 181
AcsI RAATTY 1 cut(s) 245
AcyI GRCGYC 3 cut(s) 23, 41, 133
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 60, 135
Alw21I GWGCWC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 2 cut(s) 14, 185
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 88
BcnI CCSGG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 130
BsaHI GRCGYC 3 cut(s) 23, 41, 133
BsaJI CCNNGG 3 cut(s) 54, 166, 211
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 135
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 3 cut(s) 54, 166, 211
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 60, 135
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 78
Bsh1236I CGCG 3 cut(s) 28, 102, 183
Bsh1285I CGRYCG 2 cut(s) 35, 181
BsiEI CGRYCG 2 cut(s) 35, 181
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 20, 130, 251
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 60, 135
BsmFI GGGAC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 49
BspACI CCGC 3 cut(s) 28, 31, 181
BspFNI CGCG 3 cut(s) 28, 102, 183
BspLI GGNNCC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 54, 166, 211
BssNI GRCGYC 3 cut(s) 23, 41, 133
BssT1I CCWWGG 1 cut(s) 211
BstACI GRCGYC 3 cut(s) 23, 41, 133
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 3 cut(s) 28, 102, 183
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 185
BstMCI CGRYCG 2 cut(s) 35, 181
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 3 cut(s) 28, 102, 183
BstV2I GAAGAC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 156
CfoI GCGC 2 cut(s) 14, 185
CseI GACGC 2 cut(s) 12, 122
Csp6I GTAC 1 cut(s) 112
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 2 cut(s) 287, 311
CviJI RGCY 6 cut(s) 53, 81, 125, 139, 171, 262
CviKI_1 RGCY 6 cut(s) 53, 81, 125, 139, 171, 262
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 2 cut(s) 290, 314
FaiI YATR 5 cut(s) 259, 288, 299, 312, 364
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 286, 310
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 29
GlaI GCGC 2 cut(s) 13, 184
GluI GCNGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 3 cut(s) 20, 130, 251
HgaI GACGC 2 cut(s) 12, 122
HhaI GCGC 2 cut(s) 14, 185
Hin1I GRCGYC 3 cut(s) 23, 41, 133
Hin1II CATG 2 cut(s) 290, 314
Hin6I GCGC 2 cut(s) 12, 183
HinP1I GCGC 2 cut(s) 12, 183
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 1 cut(s) 191
HpaII CCGG 3 cut(s) 20, 130, 251
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 4 cut(s) 28, 138, 179, 241
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 3 cut(s) 23, 41, 133
Hsp92II CATG 2 cut(s) 290, 314
HspAI GCGC 2 cut(s) 12, 183
LmnI GCTCC 3 cut(s) 4, 91, 176
LpnPI CCDG 5 cut(s) 33, 58, 143, 164, 264
MaeII ACGT 1 cut(s) 41
MboII GAAGA 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 245, 349
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 8 cut(s) 30, 49, 99, 108, 125, 136, 170, 176
MseI TTAA 2 cut(s) 273, 324
MspI CCGG 3 cut(s) 20, 130, 251
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 3 cut(s) 28, 102, 183
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 130
NlaIII CATG 2 cut(s) 290, 314
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 2 cut(s) 79, 147
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 174
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 273, 324
SatI GCNGC 1 cut(s) 29
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 130
SduI GDGCHC 1 cut(s) 88
SetI ASST 4 cut(s) 44, 117, 213, 332
Sse9I AATT 2 cut(s) 245, 349
SsiI CCGC 3 cut(s) 28, 31, 181
StyD4I CCNGG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 44
TaqI TCGA 5 cut(s) 35, 66, 177, 226, 236
TasI AATT 2 cut(s) 245, 349
TauI GCSGC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 273, 324
Tru9I TTAA 2 cut(s) 273, 324
TspDTI ATGAA 4 cut(s) 145, 275, 299, 317
TspGWI ACGGA 1 cut(s) 163
XapI RAATTY 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 177
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.