Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Reverse (-)

6866857 .. 6868400

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G007570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCGTGGCTTCCCTCCGCTGTCACTCTCAATTGCATCGACGACTTCGCCATGAAGCAAGACCACTTCTCCGGCGTCGCCGCCGTCGAGCACGTCCCGCTCAGCCACTTGGCCGACGGCAGGATCGACTCCGCCTCGGCTGTGGTCCTCCAATCATTCGCGTACCTCCCACGCGCCACCCAGCGTCGGCTACGTCCTTACCAGCTCATCCTCTGCCTCGGCTCCGGCGACTGCGCCACTGACTCCACTTTCACTGCCGACCTCGGTTGTCAATCTCCGAAGCATTTCGATGGCCGGATTTCCGGCGTTTACGGCTACGAAGATGATGTGAAATGTGGTACGCCGACATGGATCTGCAAGGGGCTTACTTATTTTCTTATTTGCAGGCCTGGTTTACTTCTATCTCTAAGGTTGGCTTTTGATCTGTTGGAAATGGTAAAGGCAATCAAAGGTATTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

6.39

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	2 cut(s)	161, 174
AciI	CCGC	4 cut(s)	18, 81, 98, 132
AclWI	GGATC	2 cut(s)	131, 359
AcoI	YGGCCR	2 cut(s)	111, 292
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	2 cut(s)	164, 340
AfiI	CCNNNNNNNGG	2 cut(s)	120, 186
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	131, 359
AoxI	GGCC	3 cut(s)	111, 292, 386
ArsI	GACNNNNNNTTYG	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	176, 236
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	3 cut(s)	68, 133, 328
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	1 cut(s)	460
BisI	GCNGC	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	135, 217, 262
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 186
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	3 cut(s)	135, 217, 262
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	120, 186
BseMII	CTCAG	1 cut(s)	115
BseYI	CCCAGC	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	161, 174
BshFI	GGCC	3 cut(s)	113, 294, 388
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	72, 225, 295, 303
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	120, 186
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	3 cut(s)	113, 294, 388
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	123, 351, 421
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	4 cut(s)	18, 81, 98, 132
BspANI	GGCC	3 cut(s)	113, 294, 388
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	161, 174
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	131, 359
BsrBI	CCGCTC	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	135, 217, 262
BssMI	GATC	3 cut(s)	123, 351, 421
BssNI	GRCGYC	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	101, 407
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	2 cut(s)	161, 174
BstHHI	GCGC	2 cut(s)	176, 236
BstKTI	GATC	3 cut(s)	126, 354, 424
BstMBI	GATC	3 cut(s)	123, 351, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 312
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	2 cut(s)	161, 174
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	113, 294, 388
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	237, 252
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	2 cut(s)	176, 236
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	2 cut(s)	64, 173
Csp6I	GTAC	2 cut(s)	163, 339
CviAII	CATG	2 cut(s)	52, 348
CviQI	GTAC	2 cut(s)	163, 339
DdeI	CTNAG	2 cut(s)	101, 407
DpnI	GATC	3 cut(s)	125, 353, 423
DpnII	GATC	3 cut(s)	123, 351, 421
EaeI	YGGCCR	2 cut(s)	111, 292
EciI	GGCGGA	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	2 cut(s)	55, 351
FaiI	YATR	2 cut(s)	53, 349
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	51, 347
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	460
GlaI	GCGC	2 cut(s)	175, 235
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	3 cut(s)	113, 294, 388
HapII	CCGG	4 cut(s)	72, 225, 295, 303
HgaI	GACGC	2 cut(s)	64, 173
HhaI	GCGC	2 cut(s)	176, 236
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	55, 351
Hin6I	GCGC	2 cut(s)	174, 234
HinP1I	GCGC	2 cut(s)	174, 234
HinfI	GANTC	2 cut(s)	128, 242
HpaII	CCGG	4 cut(s)	72, 225, 295, 303
Hpy166II	GTNNAC	2 cut(s)	310, 395
Hpy188I	TCNGA	1 cut(s)	279
Hpy8I	GTNNAC	2 cut(s)	310, 395
Hpy99I	CGWCG	5 cut(s)	44, 80, 89, 119, 189
HpyCH4IV	ACGT	2 cut(s)	93, 193
HpyCH4V	TGCA	3 cut(s)	36, 357, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 312
HpyF3I	CTNAG	2 cut(s)	101, 407
HpySE526I	ACGT	2 cut(s)	93, 193
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	55, 351
HspAI	GCGC	2 cut(s)	174, 234
Kzo9I	GATC	3 cut(s)	123, 351, 421
LmnI	GCTCC	1 cut(s)	227
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	2 cut(s)	93, 193
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	3 cut(s)	125, 353, 423
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	3 cut(s)	123, 351, 421
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	122, 236
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	25, 145, 158, 176, 221, 227, 272
MroXI	GAANNNNTTC	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	4 cut(s)	72, 225, 295, 303
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	2 cut(s)	161, 174
MwoI	GCNNNNNNNGC	2 cut(s)	97, 312
NdeII	GATC	3 cut(s)	123, 351, 421
NlaIII	CATG	2 cut(s)	55, 351
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	2 cut(s)	116, 198
NmuCI	GTSAC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 123, 225
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	122, 236
PpsI	GAGTC	2 cut(s)	122, 236
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	351
RsaI	GTAC	2 cut(s)	164, 340
RsaNI	GTAC	2 cut(s)	163, 339
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	123, 351, 421
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	122, 236
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	7 cut(s)	96, 168, 196, 207, 264, 413, 454
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	1 cut(s)	31
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	4 cut(s)	18, 81, 98, 132
SspMI	CTAG	1 cut(s)	460
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	388
TaiI	ACGT	2 cut(s)	96, 196
TaqI	TCGA	4 cut(s)	39, 87, 126, 288
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	83
TscAI	CASTG	2 cut(s)	244, 259
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	244, 259
VpaK11BI	GGWCC	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.