Rorug06G0183500

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008904
Physical Location & Seq
Forward (+)
29059655 .. 29061434
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0183500.1

Sequence Viewer

Length: 609 bp
ATGGCCATGAATGTGGGAGCCAATCACAAAGCTGTGCATCATGAAGATGGCAAAAAGATAACCAGAGGGACTGACCTGGAGAGTGTGACCATAGTTCAACGTGATGCTTTACTGATGGGCATGAAGGAAGATAACAATGAAGTCACTTTGAAGACGAGGATTTTATCTCTTGAGCTTCTGCAGGGTGAAATATGCATCTTCTTTCCTTTGATAGTTCTTCGGTCCCTGGATGGCTTGGATTTACCCATGAACCAAAAAATGAGTGTCCTTAGGATGGTTGAAAAGGTTTGCAAGGATCTTCATATGCTTGTTGAAATATTTGTGAACTATGACTGTGTGATCTTGAGGCACCGAACTTGTTTGAGCGGATGGTATTCTGACTCTTCATTTGGTTACAACTCTATCCAGAATATCTCAAGGGATGCAAAATGCAGATCCAATATGGCTGTTGCGTCCCAGACTACTTCAATAAAGGGTTCATCTCTTCTGTGTCTTGTGAATGTGCTTAAATCACTCGTAGATTGGGAAAAGTCATGTGGAGAATCAGATAGAATAAAAACACTCAGTCTTTGGAAGGAGATGCTTCAGCTAAAGAGTCTGTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

202

Amino Acids

22.84

Weight (kDa)

8.14

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7-like_HUS PF12783 58 - 112 2.8e-11 Mon2/Sec7/BIG1-like, HUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 366
AciI CCGC 1 cut(s) 366
AclWI GGATC 2 cut(s) 303, 429
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 5 cut(s) 98, 151, 281, 314, 468
AjnI CCWGG 2 cut(s) 75, 225
AluBI AGCT 3 cut(s) 32, 175, 589
AluI AGCT 3 cut(s) 32, 175, 589
AlwI GGATC 2 cut(s) 303, 429
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 222
AxyI CCTNAGG 1 cut(s) 269
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 158
BccI CCATC 5 cut(s) 41, 109, 224, 268, 363
BciT130I CCWGG 2 cut(s) 77, 227
BfmI CTRYAG 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 77, 227
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 19, 224, 350
BmrFI CCNGG 2 cut(s) 77, 227
BmsI GCATC 5 cut(s) 46, 94, 204, 412, 570
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 3 cut(s) 191, 364, 400
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse21I CCTNAGG 1 cut(s) 269
BseBI CCWGG 2 cut(s) 77, 227
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 4 cut(s) 235, 279, 374, 427
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 577
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 348
BslFI GGGAC 3 cut(s) 82, 208, 439
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 3 cut(s) 82, 208, 439
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 295, 339, 434
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 576
BspHI TCATGA 1 cut(s) 40
BspLI GGNNCC 3 cut(s) 19, 224, 350
BspMAI CTGCAG 1 cut(s) 183
BspPI GGATC 2 cut(s) 303, 429
BspT107I GGYRCC 1 cut(s) 348
BsrBI CCGCTC 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 295, 339, 434
Bst2UI CCWGG 2 cut(s) 77, 227
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 2 cut(s) 388, 489
BstDEI CTNAG 2 cut(s) 269, 563
BstF5I GGATG 4 cut(s) 235, 279, 374, 427
BstKTI GATC 3 cut(s) 298, 342, 437
BstMBI GATC 3 cut(s) 295, 339, 434
BstNI CCWGG 2 cut(s) 77, 227
BstSCI CCNGG 2 cut(s) 75, 225
BstSFI CTRYAG 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 295, 434
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 2 cut(s) 295, 434
Bsu36I CCTNAGG 1 cut(s) 269
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 4 cut(s) 235, 279, 374, 427
CciI TCATGA 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 441
CviAII CATG 5 cut(s) 7, 41, 121, 247, 534
CviJI RGCY 7 cut(s) 5, 20, 32, 175, 234, 446, 589
CviKI_1 RGCY 7 cut(s) 5, 20, 32, 175, 234, 446, 589
DdeI CTNAG 2 cut(s) 269, 563
DpnI GATC 3 cut(s) 297, 341, 436
DpnII GATC 3 cut(s) 295, 339, 434
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 388, 489
EarI CTCTTC 2 cut(s) 388, 489
Eco47I GGWCC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 569
Eco81I CCTNAGG 1 cut(s) 269
EcoRII CCWGG 2 cut(s) 75, 225
EcoT22I ATGCAT 1 cut(s) 197
FaeI CATG 5 cut(s) 10, 44, 124, 250, 537
FaqI GGGAC 3 cut(s) 82, 208, 439
FatI CATG 5 cut(s) 6, 40, 120, 246, 533
FauNDI CATATG 1 cut(s) 303
FokI GGATG 4 cut(s) 242, 286, 381, 434
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 441
Hin1II CATG 5 cut(s) 10, 44, 124, 250, 537
HinfI GANTC 3 cut(s) 380, 542, 595
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 2 cut(s) 379, 547
Hpy188III TCNNGA 4 cut(s) 41, 170, 343, 406
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 118, 568
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 6 cut(s) 37, 181, 195, 291, 425, 432
HpyF3I CTNAG 2 cut(s) 269, 563
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 5 cut(s) 10, 44, 124, 250, 537
Kzo9I GATC 3 cut(s) 295, 339, 434
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 8 cut(s) 62, 76, 89, 167, 212, 239, 419, 470
LweI GCATC 5 cut(s) 46, 94, 204, 412, 570
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 85, 142, 392
MalI GATC 3 cut(s) 297, 341, 436
MbiI CCGCTC 1 cut(s) 366
MboI GATC 3 cut(s) 295, 339, 434
MboII GAAGA 8 cut(s) 56, 140, 163, 190, 209, 290, 375, 476
MflI RGATCY 2 cut(s) 295, 434
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 374, 604
MnlI CCTC 3 cut(s) 59, 150, 339
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 197
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 2 cut(s) 11, 45
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 77, 227
MvaI CCWGG 2 cut(s) 77, 227
NdeI CATATG 1 cut(s) 303
NdeII GATC 3 cut(s) 295, 339, 434
NlaIII CATG 5 cut(s) 10, 44, 124, 250, 537
NlaIV GGNNCC 3 cut(s) 19, 224, 350
NmuCI GTSAC 2 cut(s) 85, 142
NsiI ATGCAT 1 cut(s) 197
PagI TCATGA 1 cut(s) 40
PfeI GAWTC 1 cut(s) 542
PleI GAGTC 2 cut(s) 374, 603
PpsI GAGTC 2 cut(s) 374, 603
Psp6I CCWGG 2 cut(s) 75, 225
PspGI CCWGG 2 cut(s) 75, 225
PspN4I GGNNCC 3 cut(s) 19, 224, 350
PspPI GGNCC 1 cut(s) 222
PstI CTGCAG 1 cut(s) 183
PsuI RGATCY 2 cut(s) 295, 434
RseI CAYNNNNRTG 2 cut(s) 11, 45
SaqAI TTAA 1 cut(s) 507
Sau3AI GATC 3 cut(s) 295, 339, 434
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 2 cut(s) 374, 604
ScrFI CCNGG 2 cut(s) 77, 227
SetI ASST 6 cut(s) 34, 78, 103, 177, 288, 591
SfaNI GCATC 5 cut(s) 46, 94, 204, 412, 570
SfcI CTRYAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 11, 45
SmlI CTYRAG 3 cut(s) 170, 343, 415
SmoI CTYRAG 3 cut(s) 170, 343, 415
SsiI CCGC 1 cut(s) 366
SspI AATATT 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 75, 225
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 1 cut(s) 103
TaqII GACCGA 1 cut(s) 210
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TseFI GTSAC 2 cut(s) 85, 142
Tsp45I GTSAC 2 cut(s) 85, 142
TspDTI ATGAA 8 cut(s) 23, 57, 137, 153, 263, 290, 375, 468
VpaK11BI GGWCC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.