Rorug06G0183300

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008904
Physical Location & Seq
Reverse (-)
28974852 .. 28989341
14490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0183300.1

Sequence Viewer

Length: 1332 bp
ATGAAGAGAAGTTGCACTGTGGCTCTGGACCCTGTCAATGTCACCAAAAATCGCTACACCGACGTCTTACCATTTGATCAAAGTAGGGTCGTTCTCAAGTCTTGTAAAGATTACAGACCTGAAGCAAGGGGCTACATTAATGCCAGCTACATCTCGGCTTGTTCCTCTGAAAGCATTTCTAGGTTTATAGCTACACAAGGTCCGCTTCCGCATACCTATGAGGATTTCTGGGAGATGGTACTTGAGAACCATTGCCCTGTAGTGGTCATGCTTACTCGCTTAGTCGACTATTACAAGATGGTCAAGTGTGGAGATTATTTTCAGGCAGAAGATGGTCCTAGAGAATTCGGTAATATAACTATAGCCACCAAGTGGACAAGAACCACTGGCACTTCATTAGTATTGCGCCTTCTGGAGGTCAGCAGTAAGGAGTTAGAGGAACCACCAATGTCTGTGCTGCATATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCACGGATACAATTGCTGTTCGTGAAATCTTGAAGACAATATATCAAGTTCCACCCAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGGAGGACTGGAACATACTGCACAATTCATAATACAATTCAGAGAATTCTTTCTGGGGACATGTCTGCTTTAGATCTTGCTAATACAATAACCACGTTTAGGACTGAGCGTATTGGAATGGTGCAGACACTGGAGCAATATTTTTTCTGTTATTCTGCAATCATTGATGAATTGGAAGACCTCATGGCGGATCTGAATGGTGAAAGGAGCTCAAAAGAGAACAACCTCCTTGCTCTCGCTTTCACCTTCTTCATCTTCGTCATCTATCTCTTCGCTCTCGGCTCAATCACCTACAGCGTCTATGGCCGCCGGGTCAAGTTCATAGCAACTGTCCAATCCGTCAAGGTTTCGTTCTGGCCAGTATTGGGTACTGCTCTTGCTTTCCAGATCGTGTTTTTAATGGTTGTTCTTGTTGCTGGGATGTTCTTGTTCTTGGTGGTGGTGGATGCGTTGAAGCAAAATTACAAGTTCTATGGAGCTTGGCACCACCGTAAATGGGTACTGAGCAAGGGGCATTGTTCTTTAGACCATGAACTGGTTTATGAGCATGAAGAGAGGAAGAAGAAGATAAGAAAGGAGGAAGATTCTGATGCTTCTTGGTACAACTTGGATTTTGTAAACTTTTTGGGTATGGTTAGATCAATGAAGAGTTTTGGGTTTTTGTTGAAGAATCCAATTGTCAAGGATTTGTTATTGTTGTTGGTTTATGGTGTTGAAATTGTGGCTGGGAATCTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

443

Amino Acids

50.53

Weight (kDa)

6.43

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Y_phosphatase PF00102 13 - 252 1.3e-70 Protein-tyrosine phosphatase
Tc-R-P PF22785 134 - 203 3.1e-06 Polymorphic toxin system, DSP-PTPase phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc36I ACCTGC 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 1074
AccB7I CCANNNNNTGG 2 cut(s) 372, 1126
AccI GTMKAC 1 cut(s) 285
AciI CCGC 4 cut(s) 203, 209, 779, 898
AclWI GGATC 1 cut(s) 789
AcoI YGGCCR 2 cut(s) 895, 947
AcsI RAATTY 2 cut(s) 344, 636
AcuI CTGAAG 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 372
AfaI GTAC 4 cut(s) 240, 961, 1092, 1193
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 4 cut(s) 529, 1045, 1258, 1307
AleI CACNNNNGTG 1 cut(s) 579
AluBI AGCT 4 cut(s) 147, 191, 801, 1070
AluI AGCT 4 cut(s) 147, 191, 801, 1070
Alw21I GWGCWC 2 cut(s) 576, 803
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 1 cut(s) 789
AlwNI CAGNNNCTG 1 cut(s) 721
AoxI GGCC 4 cut(s) 479, 559, 895, 947
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 457
ApoI RAATTY 2 cut(s) 344, 636
AseI ATTAAT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 640
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 4 cut(s) 28, 200, 335, 560
AsuC2I CCSGG 1 cut(s) 902
AsuHPI GGTGA 4 cut(s) 34, 803, 826, 871
AvaII GGWCC 3 cut(s) 28, 200, 335
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 949
BanI GGYRCC 1 cut(s) 1074
BanII GRGCYC 1 cut(s) 803
BarI GAAGNNNNNNTAC 4 cut(s) 393, 425, 1037, 1069
BbsI GAAGAC 2 cut(s) 536, 774
Bbv12I GWGCWC 2 cut(s) 576, 803
BbvI GCAGC 1 cut(s) 444
BccI CCATC 3 cut(s) 229, 292, 326
BciVI GTATCC 2 cut(s) 480, 496
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 902
BfaI CTAG 2 cut(s) 180, 339
BfmI CTRYAG 4 cut(s) 258, 360, 577, 883
BfuAI ACCTGC 1 cut(s) 575
BfuI GTATCC 2 cut(s) 480, 496
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 458, 898
BlsI GCNGC 2 cut(s) 459, 899
Bme1390I CCNGG 1 cut(s) 902
Bme18I GGWCC 3 cut(s) 28, 200, 335
BmgT120I GGNCC 4 cut(s) 28, 200, 335, 560
BmiI GGNNCC 3 cut(s) 30, 441, 1076
BmrFI CCNGG 1 cut(s) 902
BmsI GCATC 2 cut(s) 1027, 1171
BpiI GAAGAC 2 cut(s) 536, 774
BpmI CTGGAG 2 cut(s) 434, 743
BpuEI CTTGAG 2 cut(s) 80, 263
BpuMI CCSGG 1 cut(s) 902
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 487, 498, 556
Bse1I ACTGG 5 cut(s) 391, 604, 726, 950, 1131
Bse3DI GCAATG 1 cut(s) 250
BseDI CCNNGG 3 cut(s) 487, 498, 556
BseGI GGATG 2 cut(s) 1017, 1042
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 687, 1085
BseNI ACTGG 5 cut(s) 391, 604, 726, 950, 1131
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 1 cut(s) 444
BseYI CCCAGC 2 cut(s) 1007, 1316
BsgI GTGCAG 3 cut(s) 595, 603, 734
BshFI GGCC 4 cut(s) 481, 561, 897, 949
BshNI GGYRCC 1 cut(s) 1074
BsiHKAI GWGCWC 2 cut(s) 576, 803
BsiSI CCGG 1 cut(s) 901
BslFI GGGAC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 662
BsnI GGCC 4 cut(s) 481, 561, 897, 949
Bsp1286I GDGCHC 2 cut(s) 576, 803
Bsp143I GATC 5 cut(s) 76, 664, 781, 978, 1229
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 4 cut(s) 203, 209, 779, 898
BspANI GGCC 4 cut(s) 481, 561, 897, 949
BspCNI CTCAG 2 cut(s) 688, 1086
BspLI GGNNCC 3 cut(s) 30, 441, 1076
BspMAI CTGCAG 1 cut(s) 581
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 1074
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 5 cut(s) 391, 604, 726, 950, 1131
BssECI CCNNGG 3 cut(s) 487, 498, 556
BssMI GATC 5 cut(s) 76, 664, 781, 978, 1229
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 487, 556
Bst4CI ACNGT 3 cut(s) 19, 922, 1082
Bst6I CTCTTC 3 cut(s) 866, 1137, 1232
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 3 cut(s) 280, 696, 1094
BstDSI CCRYGG 2 cut(s) 487, 498
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 2 cut(s) 1017, 1042
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 5 cut(s) 79, 667, 784, 981, 1232
BstMBI GATC 5 cut(s) 76, 664, 781, 978, 1229
BstMWI GCNNNNNNNGC 1 cut(s) 894
BstNSI RCATGY 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 900
BstSFI CTRYAG 4 cut(s) 258, 360, 577, 883
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 1 cut(s) 444
BstV2I GAAGAC 2 cut(s) 536, 774
BstX2I RGATCY 2 cut(s) 664, 781
BstYI RGATCY 2 cut(s) 664, 781
BsuI GTATCC 2 cut(s) 480, 496
BsuRI GGCC 4 cut(s) 481, 561, 897, 949
BtgI CCRYGG 2 cut(s) 487, 498
BtsCI GGATG 2 cut(s) 1017, 1042
BtsI GCAGTG 2 cut(s) 574, 586
BtsIMutI CAGTG 5 cut(s) 15, 384, 574, 586, 719
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 721
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 4 cut(s) 28, 200, 335, 560
CseI GACGC 1 cut(s) 877
Csp6I GTAC 4 cut(s) 239, 960, 1091, 1192
CviAII CATG 6 cut(s) 268, 488, 652, 775, 1121, 1139
CviQI GTAC 4 cut(s) 239, 960, 1091, 1192
DdeI CTNAG 3 cut(s) 280, 696, 1094
DpnI GATC 5 cut(s) 78, 666, 783, 980, 1231
DpnII GATC 5 cut(s) 76, 664, 781, 978, 1229
DraIII CACNNNGTG 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 895, 947
Eam1104I CTCTTC 3 cut(s) 866, 1137, 1232
EarI CTCTTC 3 cut(s) 866, 1137, 1232
EciI GGCGGA 1 cut(s) 794
Ecl136II GAGCTC 1 cut(s) 801
Eco130I CCWWGG 2 cut(s) 487, 556
Eco24I GRGCYC 1 cut(s) 803
Eco47I GGWCC 3 cut(s) 28, 200, 335
Eco53kI GAGCTC 1 cut(s) 801
Eco57I CTGAAG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 801
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRI GAATTC 2 cut(s) 344, 636
EcoT14I CCWWGG 2 cut(s) 487, 556
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 2 cut(s) 487, 556
FaeI CATG 6 cut(s) 271, 491, 655, 778, 1124, 1142
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 1 cut(s) 662
FatI CATG 6 cut(s) 267, 487, 651, 774, 1120, 1138
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 458, 898
FokI GGATG 2 cut(s) 1024, 1049
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 2 cut(s) 458, 898
FspBI CTAG 2 cut(s) 180, 339
GlaI GCGC 1 cut(s) 407
GluI GCNGC 2 cut(s) 458, 898
GsaI CCCAGC 2 cut(s) 1011, 1320
GsuI CTGGAG 2 cut(s) 434, 743
HaeIII GGCC 4 cut(s) 481, 561, 897, 949
HapII CCGG 1 cut(s) 901
HgaI GACGC 1 cut(s) 877
HhaI GCGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 271, 491, 655, 778, 1124, 1142
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 1175, 1261, 1321
HpaII CCGG 1 cut(s) 901
HphI GGTGA 4 cut(s) 34, 803, 826, 871
Hpy166II GTNNAC 4 cut(s) 286, 375, 574, 1210
Hpy188I TCNGA 4 cut(s) 169, 633, 786, 1180
Hpy188III TCNNGA 7 cut(s) 26, 413, 473, 518, 526, 976, 1325
Hpy8I GTNNAC 4 cut(s) 286, 375, 574, 1210
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 419, 847
HpyCH4III ACNGT 3 cut(s) 19, 922, 1082
HpyCH4IV ACGT 2 cut(s) 63, 686
HpyCH4V TGCA 8 cut(s) 15, 460, 574, 579, 584, 612, 715, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 894
HpyF3I CTNAG 3 cut(s) 280, 696, 1094
HpySE526I ACGT 2 cut(s) 63, 686
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 271, 491, 655, 778, 1124, 1142
HspAI GCGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 5 cut(s) 76, 664, 781, 978, 1229
LmnI GCTCC 3 cut(s) 724, 798, 1067
Lsp1109I GCAGC 1 cut(s) 444
LweI GCATC 2 cut(s) 1027, 1171
MaeI CTAG 2 cut(s) 180, 339
MaeII ACGT 2 cut(s) 63, 686
MaeIII GTNAC 1 cut(s) 40
MalI GATC 5 cut(s) 78, 666, 783, 980, 1231
MboI GATC 5 cut(s) 76, 664, 781, 978, 1229
MfeI CAATTG 2 cut(s) 507, 1266
MflI RGATCY 2 cut(s) 664, 781
MhlI GDGCHC 2 cut(s) 576, 803
MlsI TGGCCA 1 cut(s) 949
MluCI AATT 9 cut(s) 344, 507, 615, 627, 636, 761, 1051, 1266, 1308
MluNI TGGCCA 1 cut(s) 949
MnlI CCTC 9 cut(s) 175, 214, 409, 430, 588, 782, 827, 1140, 1162
Mox20I TGGCCA 1 cut(s) 949
MroXI GAANNNNTTC 1 cut(s) 640
MscI TGGCCA 1 cut(s) 949
MseI TTAA 2 cut(s) 138, 989
MslI CAYNNNNRTG 2 cut(s) 216, 579
Msp20I TGGCCA 1 cut(s) 949
MspI CCGG 1 cut(s) 901
MspR9I CCNGG 1 cut(s) 902
MunI CAATTG 2 cut(s) 507, 1266
MwoI GCNNNNNNNGC 1 cut(s) 894
NciI CCSGG 1 cut(s) 902
NcoI CCATGG 1 cut(s) 487
NdeII GATC 5 cut(s) 76, 664, 781, 978, 1229
NlaIII CATG 6 cut(s) 271, 491, 655, 778, 1124, 1142
NlaIV GGNNCC 3 cut(s) 30, 441, 1076
NmeAIII GCCGAG 2 cut(s) 134, 849
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 655
OliI CACNNNNGTG 1 cut(s) 579
PciI ACATGT 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 1175, 1261, 1321
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 2 cut(s) 372, 1126
PkrI GCNGC 2 cut(s) 459, 899
PscI ACATGT 1 cut(s) 651
PshBI ATTAAT 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 803
PspFI CCCAGC 2 cut(s) 1007, 1316
PspN4I GGNNCC 3 cut(s) 30, 441, 1076
PspPI GGNCC 4 cut(s) 28, 200, 335, 560
PstI CTGCAG 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 664, 781
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 4 cut(s) 240, 961, 1092, 1193
RsaNI GTAC 4 cut(s) 239, 960, 1091, 1192
RseI CAYNNNNRTG 2 cut(s) 216, 579
SacI GAGCTC 1 cut(s) 803
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 138, 989
SatI GCNGC 2 cut(s) 458, 898
Sau3AI GATC 5 cut(s) 76, 664, 781, 978, 1229
Sau96I GGNCC 4 cut(s) 28, 200, 335, 560
ScrFI CCNGG 1 cut(s) 902
SduI GDGCHC 2 cut(s) 576, 803
SfaNI GCATC 2 cut(s) 1027, 1171
SfcI CTRYAG 4 cut(s) 258, 360, 577, 883
SinI GGWCC 3 cut(s) 28, 200, 335
SmiMI CAYNNNNRTG 2 cut(s) 216, 579
SmlI CTYRAG 2 cut(s) 95, 242
SmoI CTYRAG 2 cut(s) 95, 242
Sse9I AATT 9 cut(s) 344, 507, 615, 627, 636, 761, 1051, 1266, 1308
SsiI CCGC 4 cut(s) 203, 209, 779, 898
SspI AATATT 1 cut(s) 731
SspMI CTAG 2 cut(s) 180, 339
SstI GAGCTC 1 cut(s) 803
StyD4I CCNGG 1 cut(s) 900
StyI CCWWGG 2 cut(s) 487, 556
TaaI ACNGT 3 cut(s) 19, 922, 1082
TaiI ACGT 2 cut(s) 66, 689
TaqI TCGA 1 cut(s) 285
TasI AATT 9 cut(s) 344, 507, 615, 627, 636, 761, 1051, 1266, 1308
TauI GCSGC 1 cut(s) 900
TfiI GAWTC 3 cut(s) 1175, 1261, 1321
Tru1I TTAA 2 cut(s) 138, 989
Tru9I TTAA 2 cut(s) 138, 989
TscAI CASTG 5 cut(s) 22, 391, 581, 586, 726
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 9 cut(s) 17, 384, 608, 774, 832, 901, 1137, 1155, 1250
TspGWI ACGGA 2 cut(s) 515, 919
TspRI CASTG 5 cut(s) 22, 391, 581, 586, 726
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 2 cut(s) 372, 1126
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 3 cut(s) 28, 200, 335
VspI ATTAAT 1 cut(s) 138
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 2 cut(s) 344, 636
XceI RCATGY 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 640
XspI CTAG 2 cut(s) 180, 339
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.