Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Forward (+)

58075180 .. 58076843

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTATCCGGCGTCGCCGTCGTCGAGCACGTCCCGCTCAGCATACGGCAGGGTCGAGTTTGCCTTTGGCTGTGCTCCTCCAATCCCTCACGTACCTCCCACGCGCCGCCCAGCGTCGGCTACGTCCTTACCAGTTCATCCTCTGCCTCGGCTCCGTCGACCGCGCCACCGACTCCACTCTAGTTGCCGACCTCGGTTGTCAATCTTTGACGCATTTCGACGGCCAAATTTCCGGTGTTACGGCTACGAAGATGATGCGAAATGTGCTTGGAGTCTCTACAAGAGATCCTTATGAGGCATTATACTCGCAACTTCGTCATGAGATGTTTAAGGGACTCAGAGGTCTTCAACCACCGATCAATGTAGTTGAGAATCATGGTCTTCCTGTTGTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

133

Amino Acids

14.78

Weight (kDa)

11.03

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	2 cut(s)	105, 165
AciI	CCGC	3 cut(s)	36, 108, 163
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	32
Alw21I	GWGCWC	3 cut(s)	31, 78, 396
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	107, 167
BbsI	GAAGAC	2 cut(s)	338, 374
Bbv12I	GWGCWC	3 cut(s)	31, 78, 396
BceAI	ACGGC	4 cut(s)	3, 63, 238, 258
BcgI	CGANNNNNNTGC	4 cut(s)	238, 272, 288, 322
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	108
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	338, 374
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	148, 193
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	148, 193
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	53, 352
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	2 cut(s)	105, 165
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	3 cut(s)	31, 78, 396
BsiSI	CCGG	2 cut(s)	10, 234
BslFI	GGGAC	2 cut(s)	18, 348
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	2 cut(s)	18, 348
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	31, 78, 396
Bsp143I	GATC	2 cut(s)	286, 357
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	3 cut(s)	36, 108, 163
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	52, 351
BspFNI	CGCG	2 cut(s)	105, 165
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	148, 193
BssMI	GATC	2 cut(s)	286, 357
BssNI	GRCGYC	1 cut(s)	13
BstACI	GRCGYC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	39, 338
BstF5I	GGATG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	105, 165
BstHHI	GCGC	2 cut(s)	107, 167
BstKTI	GATC	2 cut(s)	289, 360
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	286, 357
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 35, 265
BstUI	CGCG	2 cut(s)	105, 165
BstV2I	GAAGAC	2 cut(s)	338, 374
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	107, 167
CseI	GACGC	3 cut(s)	2, 104, 220
Csp6I	GTAC	1 cut(s)	94
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	2 cut(s)	320, 377
CviJI	RGCY	5 cut(s)	71, 121, 153, 225, 245
CviKI_1	RGCY	5 cut(s)	71, 121, 153, 225, 245
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	2 cut(s)	39, 338
DpnI	GATC	2 cut(s)	288, 359
DpnII	GATC	2 cut(s)	286, 357
DrdI	GACNNNNNNGTC	1 cut(s)	342
DseDI	GACNNNNNNGTC	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	223
FaeI	CATG	2 cut(s)	323, 380
FaiI	YATR	5 cut(s)	45, 294, 304, 321, 378
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	2 cut(s)	18, 348
FatI	CATG	2 cut(s)	319, 376
FauI	CCCGC	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	106, 166
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	10, 234
HgaI	GACGC	3 cut(s)	2, 104, 220
HhaI	GCGC	2 cut(s)	107, 167
Hin1I	GRCGYC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	323, 380
Hin6I	GCGC	2 cut(s)	105, 165
HinP1I	GCGC	2 cut(s)	105, 165
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	4 cut(s)	173, 273, 336, 373
HpaII	CCGG	2 cut(s)	10, 234
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	6 cut(s)	18, 24, 27, 120, 161, 224
HpyCH4IV	ACGT	3 cut(s)	31, 92, 124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 35, 265
HpyF3I	CTNAG	2 cut(s)	39, 338
HpySE526I	ACGT	3 cut(s)	31, 92, 124
Hsp92I	GRCGYC	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	323, 380
HspAI	GCGC	2 cut(s)	105, 165
Kzo9I	GATC	2 cut(s)	286, 357
LmnI	GCTCC	2 cut(s)	81, 158
LpnPI	CCDG	5 cut(s)	23, 36, 125, 146, 247
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	3 cut(s)	31, 92, 124
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	288, 359
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	286, 357
MboII	GAAGA	3 cut(s)	262, 338, 374
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	3 cut(s)	31, 78, 396
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	3 cut(s)	167, 282, 330
MnlI	CCTC	8 cut(s)	89, 98, 107, 152, 158, 203, 289, 335
MseI	TTAA	1 cut(s)	330
MspI	CCGG	2 cut(s)	10, 234
MvnI	CGCG	2 cut(s)	105, 165
MwoI	GCNNNNNNNGC	3 cut(s)	10, 35, 265
NdeII	GATC	2 cut(s)	286, 357
NlaIII	CATG	2 cut(s)	323, 380
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	129
PagI	TCATGA	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	4 cut(s)	22, 28, 53, 156
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	3 cut(s)	167, 281, 330
PpsI	GAGTC	3 cut(s)	167, 281, 330
Ppu21I	YACGTR	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	286, 357
SchI	GAGTC	3 cut(s)	167, 282, 330
SduI	GDGCHC	3 cut(s)	31, 78, 396
SetI	ASST	6 cut(s)	34, 95, 99, 127, 195, 346
SfaNI	GCATC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	3 cut(s)	36, 108, 163
SspMI	CTAG	1 cut(s)	182
TaiI	ACGT	3 cut(s)	34, 95, 127
TaqI	TCGA	4 cut(s)	25, 56, 159, 219
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	127
TspGWI	ACGGA	1 cut(s)	145
XapI	RAATTY	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.