Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002231.1

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Forward (+)

13564 .. 17608

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002231.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtcgtggcttccctccgccatcgctctcaattgcatcgacgacttcgccatgaagcaagaccacttctccggcgtcgccgccgtcaagcacgtcccgctcagccacttggctgacggcaggatcgactccgcctcagctgtggtcctcaaatcattcgcatacctcccacgcgccgcccagcgtcagctacgtccttacaagctcatcctctgcctcggctccgacgactgcgccactgactccattttcactgtcgacctcagttgtcaatctccgaagcatttcgatggccggatttccggcgtttatggctacgaaggattgttttggttggactccaagttttcctcggccaatctgcgtggtgaggcggtggccggaagtcgaagaaaacatgagcagaggcgtcgaagttttgaggcgagcctgtggaggctgggatctatgccatgcatcgatcctgcctggcttgagtcaccttcgacccatctttcatttggtggtggcagtgttttgagtggcggccggacgccgcactttctggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

183

Amino Acids

20.03

Weight (kDa)

8.65

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	174
AciI	CCGC	8 cut(s)	18, 81, 98, 132, 177, 374, 525, 536
AclWI	GGATC	3 cut(s)	131, 451, 455
AcoI	YGGCCR	4 cut(s)	292, 354, 378, 526
AcyI	GRCGYC	3 cut(s)	75, 409, 533
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	3 cut(s)	140, 190, 205
AluI	AGCT	3 cut(s)	140, 190, 205
AlwI	GGATC	3 cut(s)	131, 451, 455
AoxI	GGCC	4 cut(s)	292, 354, 378, 526
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	176, 236
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	380, 471
AvaII	GGWCC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	136
BccI	CCATC	3 cut(s)	29, 284, 498
BceAI	ACGGC	2 cut(s)	68, 133
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	1 cut(s)	469
BisI	GCNGC	4 cut(s)	81, 177, 526, 536
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	4 cut(s)	82, 178, 527, 537
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	2 cut(s)	45, 465
Bpu10I	CCTNAGC	1 cut(s)	136
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	459
BsaHI	GRCGYC	3 cut(s)	75, 409, 533
BsaJI	CCNNGG	2 cut(s)	217, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseBI	CCWGG	1 cut(s)	469
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	217, 351
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	115, 150, 277
BseX3I	CGGCCG	1 cut(s)	526
BseYI	CCCAGC	2 cut(s)	180, 439
Bsh1236I	CGCG	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	4 cut(s)	294, 356, 380, 528
BshVI	ATCGAT	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	529
BsiSI	CCGG	5 cut(s)	72, 295, 303, 381, 529
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	4 cut(s)	294, 356, 380, 528
Bsp143I	GATC	3 cut(s)	123, 443, 460
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	8 cut(s)	18, 81, 98, 132, 177, 374, 525, 536
BspANI	GGCC	4 cut(s)	294, 356, 380, 528
BspCNI	CTCAG	3 cut(s)	114, 149, 276
BspDI	ATCGAT	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	3 cut(s)	131, 451, 455
BsrBI	CCGCTC	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	217, 351
BssMI	GATC	3 cut(s)	123, 443, 460
BssNI	GRCGYC	3 cut(s)	75, 409, 533
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	3 cut(s)	75, 409, 533
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	101, 136, 263
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	174
BstHHI	GCGC	2 cut(s)	176, 236
BstKTI	GATC	3 cut(s)	126, 446, 463
BstMBI	GATC	3 cut(s)	123, 443, 460
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 312
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstUI	CGCG	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	526
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	4 cut(s)	294, 356, 380, 528
BsuTUI	ATCGAT	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	7
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	237, 252, 517
Cac8I	GCNNGC	1 cut(s)	427
CfoI	GCGC	2 cut(s)	176, 236
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	459
CseI	GACGC	4 cut(s)	64, 173, 398, 541
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	3 cut(s)	52, 398, 453
DdeI	CTNAG	3 cut(s)	101, 136, 263
DpnI	GATC	3 cut(s)	125, 445, 462
DpnII	GATC	3 cut(s)	123, 443, 460
EaeI	YGGCCR	4 cut(s)	292, 354, 378, 526
EagI	CGGCCG	1 cut(s)	526
EciI	GGCGGA	2 cut(s)	7, 121
EclXI	CGGCCG	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	458
FaeI	CATG	3 cut(s)	55, 401, 456
FaiI	YATR	6 cut(s)	53, 163, 312, 399, 449, 454
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	51, 397, 452
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	81, 177, 526, 536
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	4 cut(s)	81, 177, 526, 536
GlaI	GCGC	2 cut(s)	175, 235
GluI	GCNGC	4 cut(s)	81, 177, 526, 536
GsaI	CCCAGC	2 cut(s)	184, 443
HaeIII	GGCC	4 cut(s)	294, 356, 380, 528
HapII	CCGG	5 cut(s)	72, 295, 303, 381, 529
HgaI	GACGC	4 cut(s)	64, 173, 398, 541
HhaI	GCGC	2 cut(s)	176, 236
Hin1I	GRCGYC	3 cut(s)	75, 409, 533
Hin1II	CATG	3 cut(s)	55, 401, 456
Hin6I	GCGC	2 cut(s)	174, 234
HinP1I	GCGC	2 cut(s)	174, 234
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	4 cut(s)	128, 242, 338, 476
HpaII	CCGG	5 cut(s)	72, 295, 303, 381, 529
HphI	GGTGA	2 cut(s)	380, 471
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	226, 279
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	4 cut(s)	44, 80, 230, 414
HpyAV	CCTTC	2 cut(s)	314, 492
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	93, 193
HpyCH4V	TGCA	2 cut(s)	36, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 312
HpyF3I	CTNAG	3 cut(s)	101, 136, 263
HpySE526I	ACGT	2 cut(s)	93, 193
Hsp92I	GRCGYC	3 cut(s)	75, 409, 533
Hsp92II	CATG	3 cut(s)	55, 401, 456
HspAI	GCGC	2 cut(s)	174, 234
Kzo9I	GATC	3 cut(s)	123, 443, 460
LmnI	GCTCC	1 cut(s)	227
LweI	GCATC	2 cut(s)	45, 465
MaeII	ACGT	2 cut(s)	93, 193
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	3 cut(s)	125, 445, 462
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	3 cut(s)	123, 443, 460
MboII	GAAGA	1 cut(s)	402
MfeI	CAATTG	1 cut(s)	31
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	4 cut(s)	122, 236, 332, 485
MmeI	TCCRAC	2 cut(s)	249, 315
Mph1103I	ATGCAT	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	5 cut(s)	72, 295, 303, 381, 529
MspR9I	CCNGG	1 cut(s)	469
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	2 cut(s)	97, 312
NdeII	GATC	3 cut(s)	123, 443, 460
NlaIII	CATG	3 cut(s)	55, 401, 456
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	2 cut(s)	198, 332
NmuCI	GTSAC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 225
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	82, 178, 527, 537
PleI	GAGTC	4 cut(s)	122, 236, 332, 484
PpsI	GAGTC	4 cut(s)	122, 236, 332, 484
Psp6I	CCWGG	1 cut(s)	467
PspFI	CCCAGC	2 cut(s)	180, 439
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	288
SalI	GTCGAC	1 cut(s)	257
SatI	GCNGC	4 cut(s)	81, 177, 526, 536
Sau3AI	GATC	3 cut(s)	123, 443, 460
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	4 cut(s)	122, 236, 332, 485
ScrFI	CCNGG	1 cut(s)	469
SetI	ASST	8 cut(s)	96, 142, 168, 192, 196, 207, 264, 484
SfaNI	GCATC	2 cut(s)	45, 465
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	8 cut(s)	18, 81, 98, 132, 177, 374, 525, 536
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	96, 196
TaqI	TCGA	8 cut(s)	39, 126, 258, 288, 388, 412, 459, 485
TasI	AATT	1 cut(s)	31
TauI	GCSGC	4 cut(s)	83, 179, 528, 538
TscAI	CASTG	3 cut(s)	244, 259, 517
TseFI	GTSAC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	2 cut(s)	68, 486
TspRI	CASTG	3 cut(s)	244, 259, 517
VpaK11BI	GGWCC	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.