Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Reverse (-)

28940604 .. 28941045

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAAGAGAGGCGTTGCTTTTCATTTTTCCTTCCTCAGCTCTTATTATACTCCAAATAGCAAAGCCCATCCATCTATCTTCCTCAATCTAATACTTCCCACAGATCCAACTCTACATGGACCTGAGCTGATGGACTGGAGTGGCTACTTGGGTTTGAACATGGCTGCTTTCTATGTTAATGACTTTGGAGTAGATCATTCTTGTTTTACAGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

72

Amino Acids

8.05

Weight (kDa)

5.98

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	3 cut(s)	39, 127, 212
AluI	AGCT	3 cut(s)	39, 127, 212
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	75, 79, 124
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	157
Bpu10I	CCTNAGC	2 cut(s)	35, 123
Bse1I	ACTGG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	49, 114
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	103, 193
BspCNI	CTCAG	2 cut(s)	48, 115
BspPI	GGATC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	103, 193
BstDEI	CTNAG	2 cut(s)	35, 123
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	106, 196
BstMBI	GATC	2 cut(s)	103, 193
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	2 cut(s)	116, 160
CviJI	RGCY	6 cut(s)	39, 65, 127, 144, 164, 212
CviKI_1	RGCY	6 cut(s)	39, 65, 127, 144, 164, 212
DdeI	CTNAG	2 cut(s)	35, 123
DpnI	GATC	2 cut(s)	105, 195
DpnII	GATC	2 cut(s)	103, 193
Eco47I	GGWCC	1 cut(s)	119
FaeI	CATG	2 cut(s)	119, 163
FaiI	YATR	4 cut(s)	48, 117, 161, 174
FatI	CATG	2 cut(s)	115, 159
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	1 cut(s)	157
Hin1II	CATG	2 cut(s)	119, 163
Hpy188III	TCNNGA	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	35, 123
Hsp92II	CATG	2 cut(s)	119, 163
Kzo9I	GATC	2 cut(s)	103, 193
LpnPI	CCDG	2 cut(s)	121, 135
Lsp1109I	GCAGC	1 cut(s)	151
MalI	GATC	2 cut(s)	105, 195
MboI	GATC	2 cut(s)	103, 193
MboII	GAAGA	2 cut(s)	16, 70
MflI	RGATCY	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	2 cut(s)	44, 92
MseI	TTAA	1 cut(s)	177
NdeII	GATC	2 cut(s)	103, 193
NlaIII	CATG	2 cut(s)	119, 163
PkrI	GCNGC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	103, 193
Sau96I	GGNCC	1 cut(s)	119
SetI	ASST	4 cut(s)	41, 124, 129, 214
SgeI	CNNG	6 cut(s)	128, 134, 148, 160, 172, 213
SinI	GGWCC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	11, 17
VpaK11BI	GGWCC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.