Rroxscaffold_6G00411590

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008904
Physical Location & Seq
Forward (+)
34157285 .. 34157894
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411590.1

Sequence Viewer

Length: 237 bp
ATGTCCCACCGCGCCACCCAAACGACGTCGTCGCTCCCCCTCGTCGTCACTCTCGGCTGCATCGACGACTTCGCCATGGAGCAAGACTACTGTCCGGCGTCGCCGCCGTCGAGCACGTCCTCTCGGCCGCTTGGCGACGGTAGGATCGAGTCGCCTCCGCGGTGCTCCTCCGGTCGCTCGTTCGAATTGCATCTGTCACTTTTTGCCTTTGTTTTGACTTTTGACTTGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

78

Amino Acids

8.48

Weight (kDa)

5.45

Isoelectric Point (pI)

72.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AccII CGCG 2 cut(s) 12, 160
AciI CCGC 5 cut(s) 10, 104, 128, 158, 160
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 231
AcyI GRCGYC 2 cut(s) 26, 98
AgsI TTSAA 1 cut(s) 229
AjiI CACGTC 1 cut(s) 117
Alw21I GWGCWC 2 cut(s) 116, 167
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 231
AspLEI GCGC 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 116, 167
BbvI GCAGC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 91
BisI GCNGC 3 cut(s) 58, 104, 128
BlsI GCNGC 3 cut(s) 59, 105, 129
BmgBI CACGTC 1 cut(s) 117
BmsI GCATC 2 cut(s) 69, 199
BoxI GACNNNNGTC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 26, 98
BsaJI CCNNGG 2 cut(s) 75, 158
BsaWI WCCGGW 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 75, 158
BseRI GAGGAG 1 cut(s) 157
BseX3I CGGCCG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 12, 160
Bsh1285I CGRYCG 2 cut(s) 128, 175
BshFI GGCC 1 cut(s) 127
BsiEI CGRYCG 2 cut(s) 128, 175
BsiHKAI GWGCWC 2 cut(s) 116, 167
BsiSI CCGG 2 cut(s) 95, 171
BsnI GGCC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 116, 167
Bsp143I GATC 1 cut(s) 144
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 5 cut(s) 10, 104, 128, 158, 160
BspANI GGCC 1 cut(s) 127
BspFNI CGCG 2 cut(s) 12, 160
BspPI GGATC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 75, 158
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 2 cut(s) 26, 98
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 92, 140
BstACI GRCGYC 2 cut(s) 26, 98
BstBI TTCGAA 1 cut(s) 183
BstDSI CCRYGG 2 cut(s) 75, 158
BstFNI CGCG 2 cut(s) 12, 160
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMCI CGRYCG 2 cut(s) 128, 175
BstPAI GACNNNNGTC 1 cut(s) 90
BstUI CGCG 2 cut(s) 12, 160
BstV1I GCAGC 1 cut(s) 44
BstZI CGGCCG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 2 cut(s) 75, 158
BtrI CACGTC 1 cut(s) 117
CfoI GCGC 1 cut(s) 14
Cfr42I CCGCGG 1 cut(s) 161
CseI GACGC 1 cut(s) 87
CviAII CATG 1 cut(s) 76
CviJI RGCY 2 cut(s) 57, 127
CviKI_1 RGCY 2 cut(s) 57, 127
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 125
EagI CGGCCG 1 cut(s) 125
EclXI CGGCCG 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 75
Eco52I CGGCCG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 79
FaiI YATR 1 cut(s) 77
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 58, 104, 128
Fsp4HI GCNGC 3 cut(s) 58, 104, 128
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 58, 104, 128
HaeIII GGCC 1 cut(s) 127
HapII CCGG 2 cut(s) 95, 171
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 2 cut(s) 26, 98
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 149
HpaII CCGG 2 cut(s) 95, 171
Hpy99I CGWCG 8 cut(s) 28, 31, 34, 47, 68, 103, 112, 140
HpyCH4III ACNGT 2 cut(s) 92, 140
HpyCH4IV ACGT 2 cut(s) 26, 116
HpyCH4V TGCA 2 cut(s) 60, 190
HpySE526I ACGT 2 cut(s) 26, 116
Hsp92I GRCGYC 2 cut(s) 26, 98
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 1 cut(s) 12
KspI CCGCGG 1 cut(s) 161
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 3 cut(s) 39, 79, 170
LpnPI CCDG 2 cut(s) 108, 184
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 2 cut(s) 69, 199
MaeII ACGT 2 cut(s) 26, 116
MaeIII GTNAC 2 cut(s) 46, 195
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 116, 167
MluCI AATT 2 cut(s) 185, 231
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 4 cut(s) 50, 130, 165, 178
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 95, 171
MvnI CGCG 2 cut(s) 12, 160
NcoI CCATGG 1 cut(s) 75
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 33, 103
NmuCI GTSAC 2 cut(s) 46, 195
NspV TTCGAA 1 cut(s) 183
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 107, 144
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 59, 105, 129
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 90
PsyI GACNNNGTC 1 cut(s) 28
SacII CCGCGG 1 cut(s) 161
SatI GCNGC 3 cut(s) 58, 104, 128
Sau3AI GATC 1 cut(s) 144
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 2 cut(s) 116, 167
SetI ASST 2 cut(s) 29, 119
SfaNI GCATC 2 cut(s) 69, 199
Sfr303I CCGCGG 1 cut(s) 161
SfuI TTCGAA 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 161
Sse9I AATT 2 cut(s) 185, 231
SsiI CCGC 5 cut(s) 10, 104, 128, 158, 160
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 92, 140
TaiI ACGT 2 cut(s) 29, 119
TaqI TCGA 4 cut(s) 63, 110, 147, 183
TasI AATT 2 cut(s) 185, 231
TauI GCSGC 2 cut(s) 106, 130
TseFI GTSAC 2 cut(s) 46, 195
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 2 cut(s) 46, 195
Tth111I GACNNNGTC 1 cut(s) 28
XapI RAATTY 1 cut(s) 231
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.