Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Forward (+)

34152717 .. 34159931

Gene Structure 7215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCGTGGCTTCCCTCCGCCGTCGCTCTCAATTGCATCGACGACTTCGCCATGAAGCAAGACCACTTCTCCGGCGTCGCCGCCGTCGAGCACGTCCCGCTCAGCCACTTGGCTGACGGCAGGATCGACTCCGCCTCGGCTGTGGTCCTCAAATCATTCGCATACCTCCCACACGCCGCCCAGCGTCAGCTACGTCCTTACCAGCTCATCCTCTGCCTCGGCTCCGGCGACTGCGCCACTGACTCCATTTTCACTGTCGACCTCAGTTATCAATCTTCGAAGCATTTCGATGGCCGGATTTCTGGCGTTTATGGCTACGAAGGTAGACCTGCTTGTGCATTTGGATGGAGGTCAGTAGCTGACTTGCTAGCTTGCTGTTGCATGCCTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

130

Amino Acids

14.03

Weight (kDa)

5.86

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	2 cut(s)	258, 325
AciI	CCGC	5 cut(s)	18, 81, 98, 132, 177
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	75
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	4 cut(s)	190, 205, 359, 371
AluI	AGCT	4 cut(s)	190, 205, 359, 371
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	2 cut(s)	284, 339
BceAI	ACGGC	3 cut(s)	5, 68, 133
BfaI	CTAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	81, 177
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	2 cut(s)	82, 178
Bme18I	GGWCC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	45
BmtI	GCTAGC	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	135, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseDI	CCNNGG	2 cut(s)	135, 217
BseGI	GGATG	2 cut(s)	207, 350
BseMII	CTCAG	2 cut(s)	115, 277
BseYI	CCCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	3 cut(s)	72, 225, 295
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	5 cut(s)	18, 81, 98, 132, 177
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	114, 276
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	131
BspT104I	TTCGAA	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	135, 217
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	369, 373, 383, 387
BstDEI	CTNAG	2 cut(s)	101, 263
BstF5I	GGATG	2 cut(s)	207, 350
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 312
BstNSI	RCATGY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	207, 350
BtsIMutI	CAGTG	2 cut(s)	237, 252
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	4 cut(s)	369, 373, 383, 387
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	2 cut(s)	64, 173
CviAII	CATG	2 cut(s)	52, 382
DdeI	CTNAG	2 cut(s)	101, 263
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	292
EciI	GGCGGA	2 cut(s)	7, 121
Eco47I	GGWCC	1 cut(s)	145
FaeI	CATG	2 cut(s)	55, 385
FaiI	YATR	4 cut(s)	53, 163, 312, 383
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	51, 381
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	2 cut(s)	258, 325
Fnu4HI	GCNGC	2 cut(s)	81, 177
FokI	GGATG	2 cut(s)	194, 357
Fsp4HI	GCNGC	2 cut(s)	81, 177
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	81, 177
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	3 cut(s)	72, 225, 295
HgaI	GACGC	2 cut(s)	64, 173
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	55, 385
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	128, 242
HpaII	CCGG	3 cut(s)	72, 225, 295
Hpy166II	GTNNAC	2 cut(s)	259, 326
Hpy8I	GTNNAC	2 cut(s)	259, 326
Hpy99I	CGWCG	4 cut(s)	26, 44, 80, 89
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	93, 193
HpyCH4V	TGCA	3 cut(s)	36, 338, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 312
HpyF3I	CTNAG	2 cut(s)	101, 263
HpySE526I	ACGT	2 cut(s)	93, 193
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	55, 385
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	8 cut(s)	85, 106, 194, 215, 238, 288, 308, 342
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	2 cut(s)	93, 193
MalI	GATC	1 cut(s)	125
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	1 cut(s)	123
MboII	GAAGA	1 cut(s)	267
MfeI	CAATTG	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	122, 236
MnlI	CCTC	8 cut(s)	25, 145, 158, 176, 221, 227, 272, 342
MroXI	GAANNNNTTC	1 cut(s)	284
MslI	CAYNNNNRTG	2 cut(s)	288, 343
MspI	CCGG	3 cut(s)	72, 225, 295
MunI	CAATTG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	97, 312
NdeII	GATC	1 cut(s)	123
NheI	GCTAGC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	55, 385
NlaIV	GGNNCC	1 cut(s)	223
NmeAIII	GCCGAG	2 cut(s)	116, 198
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	385
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 123, 225
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	82, 178
PleI	GAGTC	2 cut(s)	122, 236
PpsI	GAGTC	2 cut(s)	122, 236
PspFI	CCCAGC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	359
RseI	CAYNNNNRTG	2 cut(s)	288, 343
SalI	GTCGAC	1 cut(s)	257
SatI	GCNGC	2 cut(s)	81, 177
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	122, 236
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	45
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	288, 343
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	5 cut(s)	18, 81, 98, 132, 177
SspMI	CTAG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	96, 196
TaqI	TCGA	6 cut(s)	39, 87, 126, 258, 278, 288
TasI	AATT	1 cut(s)	31
TauI	GCSGC	2 cut(s)	83, 179
TscAI	CASTG	2 cut(s)	244, 259
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	244, 259
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	2 cut(s)	258, 325
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.