Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008904

Physical Location & Seq

Genomic Coordinates Forward (+)

29066183 .. 29066840

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCATAACAAGTGTTCGATAAAGTACCTGACAGATGAGGCGATTGAGATTGGTGTAAGTGGGACGCTCAATGTCCAGAGATCGGCGGCAGATGTCGTAGATGGCCTCATTATCGAGCAAAACAGACGCATCGAAAGACGCTCCAGCCTCCAGCAGAAGCAACTCGAGACCCGACCCGGTATCACCACCGACTACATTGAAGACCAGAAATCCCTGAAGCCCAGTGCAGTTGTCGTCGAGCTTCCGGATCCGATCCAAGCAGAGATCGACGATCTCTTTGCCGGTGGTGTATGGCCACGGGCGAAGTTGTTAGCGGCGTCCTCCTTGCCGGAAATGAGCTGCTCGGGGCGAAGTTCCGGTGCGGACCTCGTCGATGACGATGGGCTCTCGGTTGACGAAGATGGCGCGTGGAACTCCGAATCAAGTCCCAGAAATCGGCATGCTACCAGAGATAGGGATATTCGGATAAGGTTTCAGAATGGCTTAGTTAACGGGAGGGAGGGAGGGAGAACTGCCAGTGGCAGTTTTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2-Hacid_dh_C

Protein Analysis

178

Amino Acids

19.46

Weight (kDa)

5.01

Isoelectric Point (pI)

60.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008904)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0159141 RchiOBHm_Chr7g0215581
rosa_laevigata	RLG00000030231
rosa_multiflora	Rmu_sc0002231.1_g000006 Rmu_sc0003363.1_g000034
rosa_roxburghii	Rroxscaffold_175G00431950 Rroxscaffold_2G00150360 Rroxscaffold_3G00221460 Rroxscaffold_5G00359610 Rroxscaffold_6G00411590
rosa_rugosa	Rorug01G0062200 Rorug01G0341500 Rorug01G0341600 Rorug06G0183100 Rorug06G0183200 Rorug06G0183300 Rorug06G0183400 Rorug06G0183500 Rorug06G0183600 Rorug06G0183700
rosa_samantha	Rh5CG389100 Rh6AG191200
rosa_wichuraiana	Rw7G007570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	3 cut(s)	86, 314, 362
AclWI	GGATC	3 cut(s)	242, 247, 255
AcoI	YGGCCR	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	82, 435, 453
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	2 cut(s)	241, 339
AluI	AGCT	2 cut(s)	241, 339
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	3 cut(s)	242, 247, 255
Ama87I	CYCGRG	2 cut(s)	164, 343
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	2 cut(s)	103, 293
ApeKI	GCWGC	1 cut(s)	339
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	2 cut(s)	164, 343
AvaII	GGWCC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	295
BamHI	GGATCC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	95, 374, 395
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	87, 315, 340
BlsI	GCNGC	3 cut(s)	88, 316, 341
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	364
BmeT110I	CYCGRG	2 cut(s)	164, 343
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	177
BmrI	ACTGGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	127, 134
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	2 cut(s)	244, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 435, 453
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	222, 516
BseAI	TCCGGA	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	82, 435, 453
BseNI	ACTGG	2 cut(s)	222, 516
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	105, 295
BsiHKCI	CYCGRG	2 cut(s)	164, 343
BsiSI	CCGG	5 cut(s)	177, 245, 282, 329, 357
BslFI	GGGAC	2 cut(s)	76, 411
BslI	CCNNNNNNNGG	3 cut(s)	82, 435, 453
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	76, 411
BsnI	GGCC	2 cut(s)	105, 295
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	164, 343
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	5 cut(s)	80, 247, 252, 264, 271
BspACI	CCGC	3 cut(s)	86, 314, 362
BspANI	GGCC	2 cut(s)	105, 295
BspEI	TCCGGA	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	3 cut(s)	242, 247, 255
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	222, 516
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	5 cut(s)	80, 247, 252, 264, 271
BssNI	GRCGYC	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	484
BstDSI	CCRYGG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	5 cut(s)	83, 250, 255, 267, 274
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	5 cut(s)	80, 247, 252, 264, 271
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	105, 295
BtgI	CCRYGG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	229, 523
Cac8I	GCNNGC	1 cut(s)	441
CfoI	GCGC	1 cut(s)	407
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	364
CseI	GACGC	4 cut(s)	73, 135, 147, 306
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	8 cut(s)	105, 147, 220, 241, 295, 339, 385, 483
CviKI_1	RGCY	8 cut(s)	105, 147, 220, 241, 295, 339, 385, 483
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	5 cut(s)	82, 249, 254, 266, 273
DpnII	GATC	5 cut(s)	80, 247, 252, 264, 271
EaeI	YGGCCR	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	236
Eco88I	CYCGRG	2 cut(s)	164, 343
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	1 cut(s)	443
FaiI	YATR	3 cut(s)	6, 292, 441
FaqI	GGGAC	2 cut(s)	76, 411
FatI	CATG	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	87, 315, 340
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	3 cut(s)	87, 315, 340
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	3 cut(s)	87, 315, 340
GsuI	CTGGAG	2 cut(s)	127, 134
HaeIII	GGCC	2 cut(s)	105, 295
HapII	CCGG	5 cut(s)	177, 245, 282, 329, 357
HgaI	GACGC	4 cut(s)	73, 135, 147, 306
HhaI	GCGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	443
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HincII	GTYRAC	2 cut(s)	394, 490
HindII	GTYRAC	2 cut(s)	394, 490
HinfI	GANTC	1 cut(s)	419
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	5 cut(s)	177, 245, 282, 329, 357
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	394, 490
Hpy188I	TCNGA	4 cut(s)	252, 418, 465, 477
Hpy188III	TCNNGA	3 cut(s)	76, 166, 245
Hpy8I	GTNNAC	2 cut(s)	394, 490
Hpy99I	CGWCG	3 cut(s)	239, 272, 374
HpyCH4V	TGCA	2 cut(s)	4, 227
HpyF3I	CTNAG	1 cut(s)	484
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	1 cut(s)	443
HspAI	GCGC	1 cut(s)	405
Kpn2I	TCCGGA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	80, 247, 252, 264, 271
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	1 cut(s)	138
MalI	GATC	5 cut(s)	82, 249, 254, 266, 273
MboI	GATC	5 cut(s)	80, 247, 252, 264, 271
MboII	GAAGA	2 cut(s)	212, 410
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	1 cut(s)	532
MluNI	TGGCCA	1 cut(s)	295
MnlI	CCTC	8 cut(s)	31, 116, 158, 331, 377, 489, 493, 497
Mox20I	TGGCCA	1 cut(s)	295
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	2 cut(s)	489, 535
Msp20I	TGGCCA	1 cut(s)	295
MspI	CCGG	5 cut(s)	177, 245, 282, 329, 357
MspR9I	CCNGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	407
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	80, 247, 252, 264, 271
NlaIII	CATG	1 cut(s)	443
NlaIV	GGNNCC	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	419
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	88, 316, 341
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	489, 535
SatI	GCNGC	3 cut(s)	87, 315, 340
Sau3AI	GATC	5 cut(s)	80, 247, 252, 264, 271
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	5 cut(s)	30, 243, 341, 369, 473
SfaNI	GCATC	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	164
SinI	GGWCC	1 cut(s)	364
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	1 cut(s)	532
SsiI	CCGC	3 cut(s)	86, 314, 362
StyD4I	CCNGG	1 cut(s)	175
TaqI	TCGA	7 cut(s)	17, 114, 132, 165, 237, 267, 372
TasI	AATT	1 cut(s)	532
TauI	GCSGC	2 cut(s)	89, 317
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	489, 535
Tru9I	TTAA	2 cut(s)	489, 535
TscAI	CASTG	2 cut(s)	229, 523
TseI	GCWGC	1 cut(s)	339
TspRI	CASTG	2 cut(s)	229, 523
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	364
XceI	RCATGY	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.