Rh5CG389100

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008904
Physical Location & Seq
Reverse (-)
51211559 .. 51211801
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG389100.1

Sequence Viewer

Length: 243 bp
ATGAGCAGCGCCGGCATCGGATCCCCAGCCACAATGTCCCACCGCACCACCCAAACGACTTCGTCGCTCCCCCTCGTCGTCACTCTCAACTGCATCGACGACTTCACCATGGAGCAAGACTACTTGTCCGGCGTCGCCGCCGTCGAGCACGTCCCTCTCAGCCGCTTGGCTGACGGCAGGATCGAGTCCGCCTCCGCAGTGCTCCTCCAGTCGCTCGTGAGTCTGGGTTTCTGTTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

80

Amino Acids

8.39

Weight (kDa)

4.63

Isoelectric Point (pI)

56.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 43, 138, 163, 189, 195
AclWI GGATC 3 cut(s) 15, 28, 188
AcyI GRCGYC 1 cut(s) 132
AhdI GACNNNNNGTC 1 cut(s) 124
AjiI CACGTC 1 cut(s) 151
Alw21I GWGCWC 2 cut(s) 150, 204
AlwI GGATC 3 cut(s) 15, 28, 188
ApeKI GCWGC 1 cut(s) 6
AspLEI GCGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 20
BauI CACGAG 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 150, 204
BbvI GCAGC 1 cut(s) 18
BceAI ACGGC 2 cut(s) 125, 190
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 3 cut(s) 7, 138, 163
BlsI GCNGC 3 cut(s) 8, 139, 164
BmeRI GACNNNNNGTC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 2 cut(s) 24, 102
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 18
BseYI CCCAGC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 150, 204
BsiSI CCGG 2 cut(s) 12, 129
BslFI GGGAC 2 cut(s) 22, 137
BsmFI GGGAC 2 cut(s) 22, 137
Bsp1286I GDGCHC 2 cut(s) 150, 204
Bsp143I GATC 2 cut(s) 20, 180
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 5 cut(s) 43, 138, 163, 189, 195
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 3 cut(s) 15, 28, 188
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 20, 180
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 23, 183
BstMBI GATC 2 cut(s) 20, 180
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 108
BtrI CACGTC 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 11
CseI GACGC 1 cut(s) 121
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 29, 162, 170
CviKI_1 RGCY 3 cut(s) 29, 162, 170
DdeI CTNAG 1 cut(s) 158
DpnI GATC 2 cut(s) 22, 182
DpnII GATC 2 cut(s) 20, 180
DriI GACNNNNNGTC 1 cut(s) 124
Eam1105I GACNNNNNGTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FaqI GGGAC 2 cut(s) 22, 137
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 7, 138, 163
Fsp4HI GCNGC 3 cut(s) 7, 138, 163
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 7, 138, 163
GsaI CCCAGC 1 cut(s) 29
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 2 cut(s) 12, 129
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 2 cut(s) 185, 220
HpaII CCGG 2 cut(s) 12, 129
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 217
Hpy99I CGWCG 5 cut(s) 67, 80, 101, 137, 146
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 20, 180
LmnI GCTCC 3 cut(s) 72, 112, 207
LpnPI CCDG 6 cut(s) 25, 39, 142, 163, 209, 221
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 24, 102
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 22, 182
MboI GATC 2 cut(s) 20, 180
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 150, 204
MlyI GAGTC 2 cut(s) 194, 229
MnlI CCTC 4 cut(s) 83, 165, 202, 215
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 1 cut(s) 241
MspI CCGG 2 cut(s) 12, 129
MwoI GCNNNNNNNGC 1 cut(s) 12
NaeI GCCGGC 1 cut(s) 13
NcoI CCATGG 1 cut(s) 108
NdeII GATC 2 cut(s) 20, 180
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 180
PdiI GCCGGC 1 cut(s) 13
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 8, 139, 164
PleI GAGTC 2 cut(s) 193, 228
PpsI GAGTC 2 cut(s) 193, 228
PspFI CCCAGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 3 cut(s) 7, 138, 163
Sau3AI GATC 2 cut(s) 20, 180
SchI GAGTC 2 cut(s) 194, 229
SduI GDGCHC 2 cut(s) 150, 204
SetI ASST 1 cut(s) 153
SfaNI GCATC 2 cut(s) 24, 102
SsiI CCGC 5 cut(s) 43, 138, 163, 189, 195
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 96, 144, 183
TauI GCSGC 2 cut(s) 140, 165
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 79
TspRI CASTG 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.