Rmu_sc0003363.1_g000034

C-terminal binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003363.1
OG0008904
Physical Location & Seq
Reverse (-)
183554 .. 183955
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003363.1_g000034.1.cds

Sequence Viewer

Length: 402 bp
atgtcgtggcttccctctgctgtcgctctcaattgcatcgacaacttcgccatgaagcaagaccacttctccggcgtcgccgcagtcgagcacgtccagctcagccacttggccgacggcaggatcgactccgcctcggctgtggtcctccaatcatttgcgtacctcccacgcgccgcccagcgtcggctacgtccttaccagctcatcctctgcctcggctctggcgactgcgccactgactccactttcactgccgacctcggttgtcaatctccgaagcatttcgatggccggatttccggcgtttacggctacgaaggtacttcgttctttcttcatattaggtgttccactgtttcgcaccttcaatttcatcgtattggttccaattggttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005829 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008360 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010026 GO:0010090 GO:0010091 GO:0010154 GO:0010482 GO:0010494 GO:0010769 GO:0012505 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030856 GO:0031128 GO:0031129 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034063 GO:0034622 GO:0035770 GO:0036464 GO:0040007 GO:0042802 GO:0042803 GO:0042814 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0046983 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048468 GO:0048530 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051302 GO:0060284 GO:0060560 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0090558 GO:0090567 GO:0090626 GO:0090696 GO:0090697 GO:0090698 GO:0098791 GO:0099402 GO:1905392 GO:1990904 GO:2000024 GO:2000026 GO:2000039
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2-Hacid_dh_C

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

7.04

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AciI CCGC 3 cut(s) 81, 132, 177
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 111, 292
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 164, 325
AfiI CCNNNNNNNGG 2 cut(s) 120, 186
AgsI TTSAA 1 cut(s) 371
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 2 cut(s) 100, 205
AluI AGCT 2 cut(s) 100, 205
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 131
AoxI GGCC 2 cut(s) 111, 292
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 2 cut(s) 176, 236
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 284
BceAI ACGGC 2 cut(s) 133, 328
BisI GCNGC 2 cut(s) 81, 177
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 82, 178
Bme18I GGWCC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 388
BmsI GCATC 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 135, 217, 262
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 186
BseDI CCNNGG 3 cut(s) 135, 217, 262
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 120, 186
BseMII CTCAG 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 113, 294
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 3 cut(s) 72, 295, 303
BslI CCNNNNNNNGG 2 cut(s) 120, 186
BsnI GGCC 2 cut(s) 113, 294
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 123
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 3 cut(s) 81, 132, 177
BspANI GGCC 2 cut(s) 113, 294
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 388
BspPI GGATC 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 135, 217, 262
BssMI GATC 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 176, 236
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 97, 312
BstUI CGCG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 113, 294
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 237, 252, 354
CfoI GCGC 2 cut(s) 176, 236
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 2 cut(s) 64, 173
Csp6I GTAC 2 cut(s) 163, 324
CviAII CATG 1 cut(s) 52
CviQI GTAC 2 cut(s) 163, 324
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 2 cut(s) 111, 292
EciI GGCGGA 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 145
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 342
FatI CATG 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 81, 177
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 81, 177
GlaI GCGC 2 cut(s) 175, 235
GluI GCNGC 2 cut(s) 81, 177
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 113, 294
HapII CCGG 3 cut(s) 72, 295, 303
HgaI GACGC 2 cut(s) 64, 173
HhaI GCGC 2 cut(s) 176, 236
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 2 cut(s) 174, 234
HinP1I GCGC 2 cut(s) 174, 234
HinfI GANTC 2 cut(s) 128, 242
HpaII CCGG 3 cut(s) 72, 295, 303
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 3 cut(s) 80, 119, 189
HpyAV CCTTC 2 cut(s) 314, 377
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 93, 193
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 312
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 2 cut(s) 93, 193
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 2 cut(s) 174, 234
Kzo9I GATC 1 cut(s) 123
LpnPI CCDG 8 cut(s) 85, 106, 110, 194, 210, 215, 308, 316
LweI GCATC 1 cut(s) 45
MaeII ACGT 2 cut(s) 93, 193
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 1 cut(s) 329
MfeI CAATTG 2 cut(s) 31, 391
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 3 cut(s) 31, 371, 391
MlyI GAGTC 2 cut(s) 122, 236
MnlI CCTC 7 cut(s) 25, 145, 158, 176, 221, 227, 272
MroXI GAANNNNTTC 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 3 cut(s) 72, 295, 303
MunI CAATTG 2 cut(s) 31, 391
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 97, 312
NdeII GATC 1 cut(s) 123
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 388
NmeAIII GCCGAG 2 cut(s) 116, 198
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 123, 225
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 82, 178
PleI GAGTC 2 cut(s) 122, 236
PpsI GAGTC 2 cut(s) 122, 236
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 145
RsaI GTAC 2 cut(s) 164, 325
RsaNI GTAC 2 cut(s) 163, 324
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 2 cut(s) 81, 177
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 122, 236
SduI GDGCHC 1 cut(s) 93
SetI ASST 9 cut(s) 96, 102, 168, 196, 207, 264, 325, 350, 369
SfaNI GCATC 1 cut(s) 45
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 3 cut(s) 31, 371, 391
SsiI CCGC 3 cut(s) 81, 132, 177
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 96, 196
TaqI TCGA 4 cut(s) 39, 87, 126, 288
TasI AATT 3 cut(s) 31, 371, 391
TauI GCSGC 2 cut(s) 83, 179
TscAI CASTG 3 cut(s) 244, 259, 361
TspDTI ATGAA 3 cut(s) 68, 329, 365
TspRI CASTG 3 cut(s) 244, 259, 361
VpaK11BI GGWCC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.