Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Reverse (-)

50050987 .. 50054047

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20308

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCTGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGCTCTGTTTCCCCTGATTCTGGTATTGTTGGATCTAGAGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGCTCTGTTTCCCCTGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCGAAGACATAAACTCAAAAAGGCTGAGAAAGGGAAAGAATCATAAGAGGGTGTTACCAAGTGCGCAATCGATGACTGAGTATTTTCCAAAGGAAGAGTTGCAGGATCGTTTTCGTGGATCAGATCACCCAAAGCCAAGAGCAAGAGCAATAGCAATAGCAGGGAAGAGGAATGAGATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCTTTCTCTCAGATATCGCATATCTTCATTCTCTTTCTCTCAGATCATTCAGTATGCTCTTTGAGTTTGGGGGAAGCATCCAATTTCTTCTTATGTTTACCTGCACCTTGGCAAGATTCTGGTTTCTTAAAAGAACCAATAGCTCATGTACACAGAAGATGATACAAAAGTCTAGTTTTCCAGTGTCAACTGTTCTGGAACTATCAAGATCAAGATCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.63

Weight (kDa)

9.92

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	911
AclWI	GGATC	6 cut(s)	217, 260, 349, 392, 696, 709
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	263, 395
AfaI	GTAC	1 cut(s)	952
AfiI	CCNNNNNNNGG	2 cut(s)	329, 461
AgsI	TTSAA	9 cut(s)	17, 61, 136, 268, 400, 514, 520, 526, 532
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	780, 945
AluI	AGCT	2 cut(s)	780, 945
Alw26I	GTCTC	3 cut(s)	29, 283, 415
AlwI	GGATC	6 cut(s)	217, 260, 349, 392, 696, 709
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	170, 273, 405
ApoI	RAATTY	2 cut(s)	263, 395
ArsI	GACNNNNNNTTYG	4 cut(s)	261, 293, 393, 425
AspLEI	GCGC	1 cut(s)	649
AsuHPI	GGTGA	2 cut(s)	16, 701
AsuII	TTCGAA	1 cut(s)	585
BaeI	ACNNNNGTAYC	2 cut(s)	956, 989
BalI	TGGCCA	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	3 cut(s)	182, 260, 392
BccI	CCATC	2 cut(s)	106, 121
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	6, 496
BcoDI	GTCTC	3 cut(s)	29, 283, 415
BfaI	CTAG	3 cut(s)	213, 345, 975
BfmI	CTRYAG	2 cut(s)	288, 420
BfuAI	ACCTGC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	3 cut(s)	171, 274, 406
BlsI	GCNGC	3 cut(s)	172, 275, 407
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	210, 342, 888
BpiI	GAAGAC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	653
BsaBI	GATNNNNATC	5 cut(s)	208, 257, 389, 764, 1015
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	84, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 461
Bse1I	ACTGG	1 cut(s)	983
Bse8I	GATNNNNATC	5 cut(s)	208, 257, 389, 764, 1015
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	84, 909
BseGI	GGATG	3 cut(s)	225, 357, 879
BseJI	GATNNNNATC	5 cut(s)	208, 257, 389, 764, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	329, 461
BseMII	CTCAG	5 cut(s)	93, 599, 651, 825, 856
BseNI	ACTGG	1 cut(s)	983
BseXI	GCAGC	3 cut(s)	182, 260, 392
BsgI	GTGCAG	1 cut(s)	889
BshFI	GGCC	1 cut(s)	89
BshVI	ATCGAT	1 cut(s)	653
BslI	CCNNNNNNNGG	2 cut(s)	329, 461
BsmAI	GTCTC	3 cut(s)	29, 283, 415
BsmBI	CGTCTC	2 cut(s)	283, 415
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	950
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	5 cut(s)	94, 600, 652, 824, 855
BspDI	ATCGAT	1 cut(s)	653
BspHI	TCATGA	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	6 cut(s)	217, 260, 349, 392, 696, 709
BspQI	GCTCTTC	1 cut(s)	527
BspT104I	TTCGAA	1 cut(s)	585
BspTNI	GGTCTC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	983
BssECI	CCNNGG	2 cut(s)	84, 909
BssT1I	CCWWGG	2 cut(s)	84, 909
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	994
Bst6I	CTCTTC	5 cut(s)	194, 527, 536, 672, 743
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	950
BstBI	TTCGAA	1 cut(s)	585
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	5 cut(s)	102, 608, 660, 811, 842
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	225, 357, 879
BstHHI	GCGC	1 cut(s)	649
BstMAI	GTCTC	3 cut(s)	29, 283, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	2 cut(s)	288, 420
BstV1I	GCAGC	3 cut(s)	182, 260, 392
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	3 cut(s)	203, 209, 341
BstYI	RGATCY	3 cut(s)	203, 209, 341
Bsu15I	ATCGAT	1 cut(s)	653
BsuRI	GGCC	1 cut(s)	89
BsuTUI	ATCGAT	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	3 cut(s)	225, 357, 879
BtsIMutI	CAGTG	1 cut(s)	990
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	1 cut(s)	649
ClaI	ATCGAT	1 cut(s)	653
CseI	GACGC	2 cut(s)	265, 397
Csp6I	GTAC	1 cut(s)	951
CviAII	CATG	3 cut(s)	85, 491, 948
CviJI	RGCY	7 cut(s)	43, 83, 89, 607, 718, 780, 945
CviKI_1	RGCY	7 cut(s)	43, 83, 89, 607, 718, 780, 945
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	5 cut(s)	102, 608, 660, 811, 842
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	5 cut(s)	194, 527, 536, 672, 743
EarI	CTCTTC	5 cut(s)	194, 527, 536, 672, 743
Eco130I	CCWWGG	2 cut(s)	84, 909
Eco31I	GGTCTC	1 cut(s)	29
Eco32I	GATATC	1 cut(s)	817
EcoRII	CCWGG	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	2 cut(s)	84, 909
ErhI	CCWWGG	2 cut(s)	84, 909
Esp3I	CGTCTC	2 cut(s)	283, 415
FaeI	CATG	3 cut(s)	88, 494, 951
FatI	CATG	3 cut(s)	84, 490, 947
FbaI	TGATCA	2 cut(s)	6, 496
Fnu4HI	GCNGC	3 cut(s)	171, 274, 406
FokI	GGATG	3 cut(s)	232, 364, 866
Fsp4HI	GCNGC	3 cut(s)	171, 274, 406
FspBI	CTAG	3 cut(s)	213, 345, 975
FspI	TGCGCA	1 cut(s)	648
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	3 cut(s)	171, 274, 406
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	2 cut(s)	265, 397
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	3 cut(s)	88, 494, 951
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	1 cut(s)	990
HindII	GTYRAC	1 cut(s)	990
HinfI	GANTC	8 cut(s)	232, 238, 326, 364, 370, 458, 622, 918
HphI	GGTGA	2 cut(s)	16, 701
Hpy166II	GTNNAC	4 cut(s)	475, 900, 953, 990
Hpy8I	GTNNAC	4 cut(s)	475, 900, 953, 990
HpyAV	CCTTC	2 cut(s)	130, 572
HpyCH4III	ACNGT	1 cut(s)	994
HpyCH4V	TGCA	4 cut(s)	223, 355, 685, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	5 cut(s)	102, 608, 660, 811, 842
Hsp92II	CATG	3 cut(s)	88, 494, 951
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	2 cut(s)	6, 496
LguI	GCTCTTC	1 cut(s)	527
Lsp1109I	GCAGC	3 cut(s)	182, 260, 392
LweI	GCATC	3 cut(s)	210, 342, 888
MaeI	CTAG	3 cut(s)	213, 345, 975
MaeIII	GTNAC	1 cut(s)	636
MflI	RGATCY	3 cut(s)	203, 209, 341
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	263, 395, 515, 521, 527, 884
MluNI	TGGCCA	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	8 cut(s)	18, 209, 243, 341, 375, 537, 624, 744
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	797, 930
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	84
NlaIII	CATG	3 cut(s)	88, 494, 951
NsbI	TGCGCA	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	585
PagI	TCATGA	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	8 cut(s)	232, 238, 326, 364, 370, 458, 622, 918
PkrI	GCNGC	3 cut(s)	172, 275, 407
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PsuI	RGATCY	3 cut(s)	203, 209, 341
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	797, 930
SatI	GCNGC	3 cut(s)	171, 274, 406
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	9 cut(s)	41, 295, 427, 548, 583, 782, 905, 911, 947
SfaNI	GCATC	3 cut(s)	210, 342, 888
SfcI	CTRYAG	2 cut(s)	288, 420
SfuI	TTCGAA	1 cut(s)	585
Sse9I	AATT	6 cut(s)	263, 395, 515, 521, 527, 884
SspMI	CTAG	3 cut(s)	213, 345, 975
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	2 cut(s)	84, 909
TaaI	ACNGT	1 cut(s)	994
TaqI	TCGA	3 cut(s)	561, 585, 653
TasI	AATT	6 cut(s)	263, 395, 515, 521, 527, 884
TatI	WGTACW	1 cut(s)	950
TfiI	GAWTC	8 cut(s)	232, 238, 326, 364, 370, 458, 622, 918
Tru1I	TTAA	2 cut(s)	797, 930
Tru9I	TTAA	2 cut(s)	797, 930
TscAI	CASTG	1 cut(s)	990
TseI	GCWGC	3 cut(s)	170, 273, 405
TspDTI	ATGAA	4 cut(s)	164, 479, 591, 818
TspRI	CASTG	1 cut(s)	990
XapI	RAATTY	2 cut(s)	263, 395
XbaI	TCTAGA	2 cut(s)	212, 344
XspI	CTAG	3 cut(s)	213, 345, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.