RchiOBHm_Chr7g0226791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003971
Physical Location & Seq
Reverse (-)
50136063 .. 50139306
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20311

Sequence Viewer

Length: 705 bp
ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCTGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGAATCTAGAGGGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGGGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGCTCTGTTTCCCCTGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCGAAGACATAAACTCGAAGAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTGTTACCAAGTGCGCAATCGATGACTGAGTATTTTCCAAAGGAAGAGTTGCAGGATCGTATTCGTGGTATGGGTGGTTCAAATTGGAACAATGTTGATAGAATAATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.74

Weight (kDa)

9.75

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 606
AclWI GGATC 3 cut(s) 307, 350, 654
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 419
AjnI CCWGG 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 29, 373
AlwI GGATC 3 cut(s) 307, 350, 654
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 170, 363
ApoI RAATTY 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
AspLEI GCGC 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 543
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 491, 523
BbsI GAAGAC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 182, 350
BccI CCATC 3 cut(s) 106, 121, 214
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 454
BcoDI GTCTC 2 cut(s) 29, 373
BfaI CTAG 2 cut(s) 213, 303
BfmI CTRYAG 1 cut(s) 378
BglII AGATCT 2 cut(s) 203, 293
BisI GCNGC 2 cut(s) 171, 364
BlsI GCNGC 2 cut(s) 172, 365
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 543
Bsa29I ATCGAT 1 cut(s) 611
BsaBI GATNNNNATC 3 cut(s) 208, 298, 347
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse8I GATNNNNATC 3 cut(s) 208, 298, 347
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 225, 315
BseJI GATNNNNATC 3 cut(s) 208, 298, 347
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 3 cut(s) 93, 557, 609
BseXI GCAGC 2 cut(s) 182, 350
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 29, 373
BsmBI CGTCTC 1 cut(s) 373
BsmI GAATGC 2 cut(s) 173, 263
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 543
Bsp143I GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 94, 558, 610
BspDI ATCGAT 1 cut(s) 611
BspHI TCATGA 1 cut(s) 448
BspPI GGATC 3 cut(s) 307, 350, 654
BspQI GCTCTTC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 543
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 6 cut(s) 194, 284, 485, 494, 554, 630
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 3 cut(s) 102, 566, 618
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 225, 315
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 7 cut(s) 9, 206, 296, 302, 345, 457, 649
BstMAI GTCTC 2 cut(s) 29, 373
BstMBI GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 182, 350
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 3 cut(s) 203, 293, 299
BstYI RGATCY 3 cut(s) 203, 293, 299
Bsu15I ATCGAT 1 cut(s) 611
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 225, 315
Cac8I GCNNGC 1 cut(s) 529
CciI TCATGA 1 cut(s) 448
CfoI GCGC 1 cut(s) 607
ClaI ATCGAT 1 cut(s) 611
CseI GACGC 1 cut(s) 355
CviAII CATG 2 cut(s) 85, 449
CviJI RGCY 4 cut(s) 43, 83, 89, 565
CviKI_1 RGCY 4 cut(s) 43, 83, 89, 565
DdeI CTNAG 3 cut(s) 102, 566, 618
DpnI GATC 7 cut(s) 8, 205, 295, 301, 344, 456, 648
DpnII GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 6 cut(s) 194, 284, 485, 494, 554, 630
EarI CTCTTC 6 cut(s) 194, 284, 485, 494, 554, 630
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 2 cut(s) 88, 452
FaiI YATR 5 cut(s) 86, 450, 551, 662, 703
FatI CATG 2 cut(s) 84, 448
FbaI TGATCA 2 cut(s) 6, 454
Fnu4HI GCNGC 2 cut(s) 171, 364
FokI GGATG 2 cut(s) 232, 322
Fsp4HI GCNGC 2 cut(s) 171, 364
FspBI CTAG 2 cut(s) 213, 303
FspI TGCGCA 1 cut(s) 606
GlaI GCGC 1 cut(s) 606
GluI GCNGC 2 cut(s) 171, 364
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 355
HhaI GCGC 1 cut(s) 607
Hin1II CATG 2 cut(s) 88, 452
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HinfI GANTC 4 cut(s) 209, 322, 328, 416
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 7 cut(s) 103, 120, 208, 327, 333, 459, 514
Hpy188III TCNNGA 5 cut(s) 10, 58, 213, 297, 449
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 3 cut(s) 130, 223, 530
HpyCH4V TGCA 2 cut(s) 313, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 102, 566, 618
Hsp92II CATG 2 cut(s) 88, 452
HspAI GCGC 1 cut(s) 605
Ksp22I TGATCA 2 cut(s) 6, 454
Kzo9I GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
LguI GCTCTTC 1 cut(s) 485
Lsp1109I GCAGC 2 cut(s) 182, 350
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 213, 303
MaeIII GTNAC 1 cut(s) 594
MalI GATC 7 cut(s) 8, 205, 295, 301, 344, 456, 648
MboI GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
MboII GAAGA 8 cut(s) 29, 211, 301, 502, 511, 557, 571, 647
MflI RGATCY 3 cut(s) 203, 293, 299
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 5 cut(s) 353, 473, 479, 485, 673
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 6 cut(s) 18, 209, 333, 495, 555, 582
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 2 cut(s) 173, 263
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NdeII GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
NlaIII CATG 2 cut(s) 88, 452
NsbI TGCGCA 1 cut(s) 606
NspV TTCGAA 1 cut(s) 543
PagI TCATGA 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 485
PctI GAATGC 2 cut(s) 173, 263
PfeI GAWTC 4 cut(s) 209, 322, 328, 416
PkrI GCNGC 2 cut(s) 172, 365
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 652, 684
PsuI RGATCY 3 cut(s) 203, 293, 299
SapI GCTCTTC 1 cut(s) 485
SatI GCNGC 2 cut(s) 171, 364
Sau3AI GATC 7 cut(s) 6, 203, 293, 299, 342, 454, 646
ScrFI CCNGG 1 cut(s) 40
SetI ASST 4 cut(s) 41, 385, 506, 541
SfaNI GCATC 1 cut(s) 300
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 543
Sse9I AATT 5 cut(s) 353, 473, 479, 485, 673
SspMI CTAG 2 cut(s) 213, 303
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 4 cut(s) 519, 543, 557, 611
TasI AATT 5 cut(s) 353, 473, 479, 485, 673
TfiI GAWTC 4 cut(s) 209, 322, 328, 416
TseI GCWGC 2 cut(s) 170, 363
TspDTI ATGAA 4 cut(s) 164, 257, 437, 549
XapI RAATTY 1 cut(s) 353
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 2 cut(s) 213, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.