Rroxscaffold_3G00237390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003971
Physical Location & Seq
Reverse (-)
24971168 .. 24971953
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237390.1

Sequence Viewer

Length: 681 bp
ATGGTGATCAGGATTGAAGATCTGAGGAAAAACGAGGCCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGAGGATGTGAAAGCCATGGCCAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCTTTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAAGCAGAGGATCATCATTAAATTTAAACGCTGCGTCTCTCCCTCTACAGGTACTGCTTCTTATTCTTGTTCTGTTTCCCCTGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAATTTGAAATTGAAATTGAAGAGCAAGAAGAGGCGCTACTCTGAAATCGATCAAGCAGGCGATGAAGGTTTCGAAGAAATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTATTACCAAGTGTGCAATCGATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCGTATTCGTGGATCAGGTCACCCAAAGCCAAGATTTAGAGCAAGAGCAAGAGCAATAGCAGGGAAGAGGAATGATATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGGTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.75

Weight (kDa)

10.12

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 217, 254, 558, 571
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 2 cut(s) 257, 376
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 284, 323
AgsI TTSAA 7 cut(s) 17, 61, 136, 376, 382, 388, 394
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 173, 648
AluI AGCT 2 cut(s) 173, 648
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 4 cut(s) 217, 254, 558, 571
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 2 cut(s) 36, 87
ApeKI GCWGC 2 cut(s) 170, 267
ApoI RAATTY 2 cut(s) 257, 376
AspLEI GCGC 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 16, 563
AsuII TTCGAA 1 cut(s) 447
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbvI GCAGC 2 cut(s) 182, 254
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 358
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 412
BglII AGATCT 2 cut(s) 19, 203
BisI GCNGC 2 cut(s) 171, 268
BlsI GCNGC 2 cut(s) 172, 269
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 447
Bsa29I ATCGAT 2 cut(s) 423, 515
BsaBI GATNNNNATC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 323
Bse8I GATNNNNATC 1 cut(s) 208
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 2 cut(s) 423, 515
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 79, 225
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 284, 323
BseMII CTCAG 3 cut(s) 14, 93, 461
BseXI GCAGC 2 cut(s) 182, 254
BshFI GGCC 2 cut(s) 38, 89
BshVI ATCGAT 2 cut(s) 423, 515
BslI CCNNNNNNNGG 2 cut(s) 284, 323
BsmAI GTCTC 1 cut(s) 277
BsmBI CGTCTC 1 cut(s) 277
BsnI GGCC 2 cut(s) 38, 89
Bsp119I TTCGAA 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 2 cut(s) 38, 89
BspCNI CTCAG 3 cut(s) 15, 94, 462
BspDI ATCGAT 2 cut(s) 423, 515
BspHI TCATGA 1 cut(s) 352
BspPI GGATC 4 cut(s) 217, 254, 558, 571
BspQI GCTCTTC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 4 cut(s) 194, 389, 398, 611
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 91, 433
BstDEI CTNAG 3 cut(s) 23, 102, 470
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 2 cut(s) 79, 225
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstMAI GTCTC 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 182, 254
BstX2I RGATCY 3 cut(s) 19, 203, 209
BstYI RGATCY 3 cut(s) 19, 203, 209
Bsu15I ATCGAT 2 cut(s) 423, 515
BsuRI GGCC 2 cut(s) 38, 89
BsuTUI ATCGAT 2 cut(s) 423, 515
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 79, 225
Cac8I GCNNGC 2 cut(s) 91, 433
CaiI CAGNNNCTG 1 cut(s) 290
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 411
ClaI ATCGAT 2 cut(s) 423, 515
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 85, 353
CviJI RGCY 8 cut(s) 38, 43, 83, 89, 173, 469, 580, 648
CviKI_1 RGCY 8 cut(s) 38, 43, 83, 89, 173, 469, 580, 648
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 23, 102, 470
DraI TTTAAA 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 194, 389, 398, 611
EarI CTCTTC 4 cut(s) 194, 389, 398, 611
Eco130I CCWWGG 1 cut(s) 84
Eco32I GATATC 1 cut(s) 628
Eco91I GGTNACC 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 2 cut(s) 88, 356
FaiI YATR 3 cut(s) 86, 354, 641
FatI CATG 2 cut(s) 84, 352
FbaI TGATCA 2 cut(s) 6, 358
Fnu4HI GCNGC 2 cut(s) 171, 268
FokI GGATG 2 cut(s) 86, 232
Fsp4HI GCNGC 2 cut(s) 171, 268
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 410
GluI GCNGC 2 cut(s) 171, 268
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 2 cut(s) 38, 89
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 411
Hin1II CATG 2 cut(s) 88, 356
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 2 cut(s) 232, 320
HphI GGTGA 2 cut(s) 16, 563
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 6 cut(s) 24, 103, 120, 237, 363, 418
Hpy188III TCNNGA 6 cut(s) 10, 58, 207, 213, 353, 631
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 130, 434
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 223, 511, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 23, 102, 470
Hsp92II CATG 2 cut(s) 88, 356
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 2 cut(s) 6, 358
LguI GCTCTTC 1 cut(s) 389
Lsp1109I GCAGC 2 cut(s) 182, 254
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 569
MboII GAAGA 7 cut(s) 29, 211, 406, 415, 461, 551, 628
MflI RGATCY 3 cut(s) 19, 203, 209
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 5 cut(s) 257, 376, 383, 389, 542
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 9 cut(s) 18, 28, 64, 209, 237, 289, 399, 486, 612
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 255, 261, 665
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NlaIII CATG 2 cut(s) 88, 356
NmuCI GTSAC 1 cut(s) 569
NspV TTCGAA 1 cut(s) 447
PagI TCATGA 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 232, 320
PkrI GCNGC 2 cut(s) 172, 269
Psp6I CCWGG 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 3 cut(s) 19, 203, 209
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 3 cut(s) 255, 261, 665
SatI GCNGC 2 cut(s) 171, 268
ScrFI CCNGG 1 cut(s) 40
SetI ASST 5 cut(s) 175, 289, 445, 571, 650
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 447
Sse9I AATT 5 cut(s) 257, 376, 383, 389, 542
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 4 cut(s) 423, 447, 461, 515
TasI AATT 5 cut(s) 257, 376, 383, 389, 542
TfiI GAWTC 2 cut(s) 232, 320
Tru1I TTAA 3 cut(s) 255, 261, 665
Tru9I TTAA 3 cut(s) 255, 261, 665
TseFI GTSAC 1 cut(s) 569
TseI GCWGC 2 cut(s) 170, 267
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 3 cut(s) 164, 341, 453
XapI RAATTY 2 cut(s) 257, 376
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.