Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Forward (+)

50378264 .. 50379305

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCTGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGATCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGAATCTAGAGGGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGGGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.86

Weight (kDa)

9.42

Isoelectric Point (pI)

65.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	89, 310, 353
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	356
AgsI	TTSAA	9 cut(s)	17, 61, 136, 229, 361, 398, 404, 410, 416
AjnI	CCWGG	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	29, 376
AlwI	GGATC	3 cut(s)	89, 310, 353
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	170, 263, 366
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AsuHPI	GGTGA	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	89
BarI	GAAGNNNNNNTAC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	182, 275, 353
BccI	CCATC	3 cut(s)	106, 121, 214
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	29, 376
BfaI	CTAG	2 cut(s)	213, 306
BfmI	CTRYAG	1 cut(s)	381
BglII	AGATCT	2 cut(s)	203, 296
BisI	GCNGC	3 cut(s)	171, 264, 367
BlsI	GCNGC	3 cut(s)	172, 265, 368
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	303
BsaBI	GATNNNNATC	3 cut(s)	208, 301, 350
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	84
Bse8I	GATNNNNATC	3 cut(s)	208, 301, 350
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	225, 318
BseJI	GATNNNNATC	3 cut(s)	208, 301, 350
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	182, 275, 353
BshFI	GGCC	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	29, 376
BsmBI	CGTCTC	1 cut(s)	376
BsmI	GAATGC	2 cut(s)	173, 266
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
Bsp19I	CCATGG	1 cut(s)	84
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	94
BspPI	GGATC	3 cut(s)	89, 310, 353
BspQI	GCTCTTC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	40
Bst6I	CTCTTC	4 cut(s)	194, 287, 411, 420
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	225, 318
BstKTI	GATC	6 cut(s)	9, 97, 206, 299, 305, 348
BstMAI	GTCTC	2 cut(s)	29, 376
BstMBI	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	3 cut(s)	182, 275, 353
BstX2I	RGATCY	3 cut(s)	203, 296, 302
BstYI	RGATCY	3 cut(s)	203, 296, 302
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	225, 318
CseI	GACGC	1 cut(s)	358
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	43, 83, 89
CviKI_1	RGCY	3 cut(s)	43, 83, 89
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	6 cut(s)	8, 96, 205, 298, 304, 347
DpnII	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	194, 287, 411, 420
EarI	CTCTTC	4 cut(s)	194, 287, 411, 420
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	1 cut(s)	88
FaiI	YATR	1 cut(s)	86
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	171, 264, 367
FokI	GGATG	2 cut(s)	232, 325
Fsp4HI	GCNGC	3 cut(s)	171, 264, 367
FspBI	CTAG	2 cut(s)	213, 306
GluI	GCNGC	3 cut(s)	171, 264, 367
HaeIII	GGCC	1 cut(s)	89
HgaI	GACGC	1 cut(s)	358
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	3 cut(s)	209, 325, 331
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	103, 120, 208, 330, 336, 440
Hpy188III	TCNNGA	4 cut(s)	10, 58, 213, 300
HpyAV	CCTTC	2 cut(s)	130, 223
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
LguI	GCTCTTC	1 cut(s)	411
LpnPI	CCDG	7 cut(s)	25, 52, 137, 177, 270, 285, 375
Lsp1109I	GCAGC	3 cut(s)	182, 275, 353
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	213, 306
MalI	GATC	6 cut(s)	8, 96, 205, 298, 304, 347
MboI	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
MboII	GAAGA	5 cut(s)	29, 211, 304, 428, 437
MflI	RGATCY	3 cut(s)	203, 296, 302
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	4 cut(s)	356, 399, 405, 411
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	4 cut(s)	18, 209, 336, 421
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	2 cut(s)	173, 266
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
NlaIII	CATG	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	411
PctI	GAATGC	2 cut(s)	173, 266
PfeI	GAWTC	3 cut(s)	209, 325, 331
PkrI	GCNGC	3 cut(s)	172, 265, 368
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PsuI	RGATCY	3 cut(s)	203, 296, 302
SapI	GCTCTTC	1 cut(s)	411
SatI	GCNGC	3 cut(s)	171, 264, 367
Sau3AI	GATC	6 cut(s)	6, 94, 203, 296, 302, 345
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	2 cut(s)	41, 432
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	381
Sse9I	AATT	4 cut(s)	356, 399, 405, 411
SspMI	CTAG	2 cut(s)	213, 306
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	84
TasI	AATT	4 cut(s)	356, 399, 405, 411
TfiI	GAWTC	3 cut(s)	209, 325, 331
TseI	GCWGC	3 cut(s)	170, 263, 366
TspDTI	ATGAA	2 cut(s)	164, 257
XapI	RAATTY	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	2 cut(s)	213, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.