Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Forward (+)

19271335 .. 19272114

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTGATCAGGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGACCAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAGGCAGAGGATCATTATCAAATTCAAACGCTGCGTCTCTGTCACTACAGGTACTGCTTCTTATTCTTGTTCTGTTTCCCCTGATTCTGGTTTTGTTGTCAACCCAGACCCACTTCATGATGATCACAAACAGGATTTGGAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCAAAGAAATGAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTATTACCAAGTGTGCAATCGATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCGTATTGGTGGATCAGATCACCCAAAGCCAAGAGCAAGAGCAATAGCAATAGCAGGGAAGAGGAATGAGATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCTTTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.41

Weight (kDa)

9.79

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	217, 254, 558, 571
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	8 cut(s)	17, 61, 136, 262, 382, 388, 394, 448
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	642
AluI	AGCT	1 cut(s)	642
Alw26I	GTCTC	2 cut(s)	29, 277
AlwI	GGATC	4 cut(s)	217, 254, 558, 571
AlwNI	CAGNNNCTG	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	170, 267
ApoI	RAATTY	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	2 cut(s)	16, 563
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
BbvI	GCAGC	2 cut(s)	182, 254
BccI	CCATC	2 cut(s)	106, 121
BciT130I	CCWGG	1 cut(s)	40
BclI	TGATCA	2 cut(s)	6, 358
BcoDI	GTCTC	2 cut(s)	29, 277
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	2 cut(s)	171, 268
BlsI	GCNGC	2 cut(s)	172, 269
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	515
BsaBI	GATNNNNATC	3 cut(s)	208, 251, 626
BsaI	GGTCTC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse8I	GATNNNNATC	3 cut(s)	208, 251, 626
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	1 cut(s)	515
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	3 cut(s)	208, 251, 626
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	93, 461
BseXI	GCAGC	2 cut(s)	182, 254
BshVI	ATCGAT	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	29, 277
BsmBI	CGTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	94, 462
BspDI	ATCGAT	1 cut(s)	515
BspHI	TCATGA	1 cut(s)	352
BspPI	GGATC	4 cut(s)	217, 254, 558, 571
BspQI	GCTCTTC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	4 cut(s)	194, 389, 398, 605
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	102, 470
BstF5I	GGATG	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	29, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	182, 254
BstX2I	RGATCY	2 cut(s)	203, 209
BstYI	RGATCY	2 cut(s)	203, 209
Bsu15I	ATCGAT	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	515
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	85, 353
CviJI	RGCY	5 cut(s)	43, 83, 469, 580, 642
CviKI_1	RGCY	5 cut(s)	43, 83, 469, 580, 642
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	102, 470
Eam1104I	CTCTTC	4 cut(s)	194, 389, 398, 605
EarI	CTCTTC	4 cut(s)	194, 389, 398, 605
Eco31I	GGTCTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	88, 356
FaiI	YATR	3 cut(s)	86, 354, 635
FatI	CATG	2 cut(s)	84, 352
FbaI	TGATCA	2 cut(s)	6, 358
Fnu4HI	GCNGC	2 cut(s)	171, 268
FokI	GGATG	1 cut(s)	232
Fsp4HI	GCNGC	2 cut(s)	171, 268
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	171, 268
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	88, 356
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	2 cut(s)	232, 320
HphI	GGTGA	2 cut(s)	16, 563
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	5 cut(s)	103, 120, 237, 418, 568
Hpy188III	TCNNGA	6 cut(s)	10, 58, 207, 213, 353, 625
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	130, 434
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	3 cut(s)	223, 511, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	2 cut(s)	102, 470
Hsp92II	CATG	2 cut(s)	88, 356
Ksp22I	TGATCA	2 cut(s)	6, 358
LguI	GCTCTTC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	182, 254
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	277
MboII	GAAGA	6 cut(s)	29, 211, 406, 415, 551, 622
MflI	RGATCY	2 cut(s)	203, 209
MluCI	AATT	5 cut(s)	257, 377, 383, 389, 542
MnlI	CCTC	7 cut(s)	18, 209, 231, 237, 399, 486, 606
MseI	TTAA	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	40
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	88, 356
NmuCI	GTSAC	1 cut(s)	277
PagI	TCATGA	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	173
PfeI	GAWTC	2 cut(s)	232, 320
PkrI	GCNGC	2 cut(s)	172, 269
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	203, 209
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	2 cut(s)	171, 268
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	4 cut(s)	289, 410, 445, 644
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	5 cut(s)	257, 377, 383, 389, 542
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	3 cut(s)	423, 461, 515
TasI	AATT	5 cut(s)	257, 377, 383, 389, 542
TfiI	GAWTC	2 cut(s)	232, 320
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	170, 267
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	164, 341, 453, 470
TspGWI	ACGGA	1 cut(s)	660
XapI	RAATTY	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	212
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.