Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003971

Physical Location & Seq

Genomic Coordinates Forward (+)

19323387 .. 19328867

Gene Structure 5481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001704

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTGATCAGGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGACCAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGACTAGGAACAAACCAGAAGCAGCCTTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAGGCAGAGGATCATTATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGTTCTGTTTCCCCTGATTCTGGTTTTGTTGTAAACCCAGACCCACTTCATGATGATCACAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCAAAGAAATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTATTACCAACTGTGCAATCGATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCGTATTGGTGGATCAGATAACCCAAAGCCAAGAGCAATAGCAATAGCAGGGGAGAGGAAACAGATCAAGAGCAATATGACCAGTTTTGCTTTGTCCTTGTTAATCTGCTTTCTGTTGGCAGACATGAGTCTTGCTGGGAATTCCTTAACTGGAAGTATCCCACCTACGCTTTCACTCATGAGCTCTTTGAACTCTCTAAATCTCTCTCGGAATAAACTTTCAGGTGAGGTTCCAGAAAATTTAGAGAAATTGAAGCTAAGTTTCATAGATCTGTCTGAAAATCTGTTATCTGGAAGAGTACCATCTGATCTTCTGACCACTGGTGGAGACAAAGCCTTTCATGGAAACAACGAACTCTGCATCGATCAATATTCAAAAACACATTCAAATTCTGATATGAATACATGTTCTGAAAAGCATAGTCAGAAAAGGGTGCTTCAGAATAAATTGGTTTTGTTCTCTATCATAGCATCTGCCTTGGTTGTTGTTTTTGCTGGATTGGTGCTTGTCAGTTATAAGAACTTCAAGCTTTCTGAGGTTGACAGAGAAAACAGTTTGGAAGAGGGGAAGGAAATAGATCTGAAATGGAAATTTGCATCTTTTCACCAACTGGAAATAGATGCAGATGAAATCTGTGATTTTGAAGAAGAAAATTTGGTTAGTAGTGGCAGTACAGGGAAAGTTTACCGTAAAGACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase

Protein Analysis

418

Amino Acids

46.65

Weight (kDa)

8.98

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003971)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0226751 RchiOBHm_Chr7g0226791 RchiOBHm_Chr7g0226831 RchiOBHm_Chr7g0226961 RchiOBHm_Chr7g0227011
rosa_laevigata	RLG00000001688 RLG00000001689 RLG00000001691 RLG00000001692 RLG00000001696 RLG00000001699 RLG00000001701 RLG00000001703 RLG00000001704 RLG00000001705
rosa_roxburghii	Rroxscaffold_3G00232490 Rroxscaffold_3G00237390 Rroxscaffold_3G00237400 Rroxscaffold_6G00388760
rosa_rugosa	Rorug07G0239400
rosa_samantha	Rh7AG389500 Rh7AG389900 Rh7AG390100 Rh7AG390200 Rh7BG266100 Rh7BG373500 Rh7BG373700 Rh7CG406600 Rh7CG408800 Rh7CG409000 Rh7CG409100
rosa_wichuraiana	Rw7G032480 Rw7G032490 Rw7G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1068, 1252
AclWI	GGATC	4 cut(s)	217, 254, 558, 571
AcsI	RAATTY	6 cut(s)	257, 691, 790, 940, 1142, 1204
AcuI	CTGAAG	1 cut(s)	974
AfaI	GTAC	2 cut(s)	852, 1225
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	956
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	735, 808, 1081
AluI	AGCT	3 cut(s)	735, 808, 1081
Alw21I	GWGCWC	1 cut(s)	737
Alw26I	GTCTC	3 cut(s)	29, 277, 873
AlwI	GGATC	4 cut(s)	217, 254, 558, 571
ApeKI	GCWGC	2 cut(s)	170, 267
ApoI	RAATTY	6 cut(s)	257, 691, 790, 940, 1142, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	3 cut(s)	16, 788, 1148
BanII	GRGCYC	1 cut(s)	737
BarI	GAAGNNNNNNTAC	2 cut(s)	395, 427
Bbv12I	GWGCWC	1 cut(s)	737
BbvI	GCAGC	2 cut(s)	182, 254
BccI	CCATC	3 cut(s)	106, 121, 862
BciT130I	CCWGG	1 cut(s)	40
BciVI	GTATCC	1 cut(s)	719
BclI	TGATCA	2 cut(s)	6, 358
BcoDI	GTCTC	3 cut(s)	29, 277, 873
BfaI	CTAG	2 cut(s)	153, 213
BfmI	CTRYAG	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	719
BglII	AGATCT	3 cut(s)	203, 820, 1129
BisI	GCNGC	2 cut(s)	171, 268
BlsI	GCNGC	2 cut(s)	172, 269
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	5 cut(s)	210, 921, 1031, 1157, 1162
BoxI	GACNNNNGTC	1 cut(s)	678
Bsa29I	ATCGAT	2 cut(s)	515, 915
BsaBI	GATNNNNATC	2 cut(s)	208, 251
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	1029
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	4 cut(s)	633, 706, 877, 1167
Bse8I	GATNNNNATC	2 cut(s)	208, 251
BseBI	CCWGG	1 cut(s)	40
BseCI	ATCGAT	2 cut(s)	515, 915
BseDI	CCNNGG	1 cut(s)	1029
BseGI	GGATG	1 cut(s)	225
BseJI	GATNNNNATC	2 cut(s)	208, 251
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	3 cut(s)	93, 461, 1077
BseNI	ACTGG	4 cut(s)	633, 706, 877, 1167
BseXI	GCAGC	2 cut(s)	182, 254
BseYI	CCCAGC	1 cut(s)	686
BshVI	ATCGAT	2 cut(s)	515, 915
BsiHKAI	GWGCWC	1 cut(s)	737
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	29, 277, 873
BsmBI	CGTCTC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	737
BspCNI	CTCAG	3 cut(s)	94, 462, 1078
BspDI	ATCGAT	2 cut(s)	515, 915
BspHI	TCATGA	2 cut(s)	352, 729
BspLI	GGNNCC	1 cut(s)	783
BspPI	GGATC	4 cut(s)	217, 254, 558, 571
BspQI	GCTCTTC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	29
BsrI	ACTGG	4 cut(s)	633, 706, 877, 1167
BssECI	CCNNGG	1 cut(s)	1029
BssT1I	CCWWGG	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	4 cut(s)	508, 523, 1106, 1241
Bst6I	CTCTTC	5 cut(s)	194, 389, 398, 841, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	4 cut(s)	102, 470, 809, 1086
BstF5I	GGATG	1 cut(s)	225
BstMAI	GTCTC	3 cut(s)	29, 277, 873
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	960
BstPAI	GACNNNNGTC	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	182, 254
BstX2I	RGATCY	4 cut(s)	203, 209, 820, 1129
BstYI	RGATCY	4 cut(s)	203, 209, 820, 1129
Bsu15I	ATCGAT	2 cut(s)	515, 915
BsuI	GTATCC	1 cut(s)	719
BsuTUI	ATCGAT	2 cut(s)	515, 915
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	870
Cac8I	GCNNGC	1 cut(s)	433
CciI	TCATGA	2 cut(s)	352, 729
ClaI	ATCGAT	2 cut(s)	515, 915
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	851, 1224
CviAII	CATG	6 cut(s)	85, 353, 676, 730, 893, 957
CviJI	RGCY	9 cut(s)	43, 83, 173, 469, 580, 735, 808, 887, 1081
CviKI_1	RGCY	9 cut(s)	43, 83, 173, 469, 580, 735, 808, 887, 1081
CviQI	GTAC	2 cut(s)	851, 1224
DdeI	CTNAG	4 cut(s)	102, 470, 809, 1086
Eam1104I	CTCTTC	5 cut(s)	194, 389, 398, 841, 1107
EarI	CTCTTC	5 cut(s)	194, 389, 398, 841, 1107
Ecl136II	GAGCTC	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	1029
Eco24I	GRGCYC	1 cut(s)	737
Eco31I	GGTCTC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	974
EcoICRI	GAGCTC	1 cut(s)	735
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	1029
EcoT38I	GRGCYC	1 cut(s)	737
ErhI	CCWWGG	1 cut(s)	1029
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	6 cut(s)	88, 356, 679, 733, 896, 960
FatI	CATG	6 cut(s)	84, 352, 675, 729, 892, 956
FbaI	TGATCA	2 cut(s)	6, 358
Fnu4HI	GCNGC	2 cut(s)	171, 268
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	737
Fsp4HI	GCNGC	2 cut(s)	171, 268
FspBI	CTAG	2 cut(s)	153, 213
GluI	GCNGC	2 cut(s)	171, 268
GsaI	CCCAGC	1 cut(s)	690
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	6 cut(s)	88, 356, 679, 733, 896, 960
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	1 cut(s)	1079
HinfI	GANTC	3 cut(s)	232, 320, 679
HphI	GGTGA	3 cut(s)	16, 788, 1148
Hpy166II	GTNNAC	3 cut(s)	337, 1093, 1237
Hpy188III	TCNNGA	9 cut(s)	10, 58, 207, 213, 353, 619, 730, 785, 843
Hpy8I	GTNNAC	3 cut(s)	337, 1093, 1237
HpyAV	CCTTC	4 cut(s)	130, 184, 434, 1114
HpyCH4III	ACNGT	4 cut(s)	508, 523, 1106, 1241
HpyCH4V	TGCA	6 cut(s)	223, 511, 547, 912, 1148, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	4 cut(s)	102, 470, 809, 1086
Hsp92II	CATG	6 cut(s)	88, 356, 679, 733, 896, 960
Ksp22I	TGATCA	2 cut(s)	6, 358
LguI	GCTCTTC	1 cut(s)	389
Lsp1109I	GCAGC	2 cut(s)	182, 254
LweI	GCATC	5 cut(s)	210, 921, 1031, 1157, 1162
MaeI	CTAG	2 cut(s)	153, 213
MflI	RGATCY	4 cut(s)	203, 209, 820, 1129
MhlI	GDGCHC	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	688
MseI	TTAA	2 cut(s)	653, 698
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	112
NlaIII	CATG	6 cut(s)	88, 356, 679, 733, 896, 960
NlaIV	GGNNCC	1 cut(s)	783
NspI	RCATGY	1 cut(s)	960
PagI	TCATGA	2 cut(s)	352, 729
PciI	ACATGT	1 cut(s)	956
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	232, 320
PkrI	GCNGC	2 cut(s)	172, 269
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
PscI	ACATGT	1 cut(s)	956
PshAI	GACNNNNGTC	1 cut(s)	678
PsiI	TTATAA	2 cut(s)	1068, 1252
Psp124BI	GAGCTC	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	783
PsuI	RGATCY	4 cut(s)	203, 209, 820, 1129
RsaI	GTAC	2 cut(s)	852, 1225
RsaNI	GTAC	2 cut(s)	851, 1224
SacI	GAGCTC	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	653, 698
SatI	GCNGC	2 cut(s)	171, 268
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	5 cut(s)	210, 921, 1031, 1157, 1162
SfcI	CTRYAG	1 cut(s)	282
SspI	AATATT	1 cut(s)	923
SspMI	CTAG	2 cut(s)	153, 213
SstI	GAGCTC	1 cut(s)	737
StyD4I	CCNGG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	4 cut(s)	508, 523, 1106, 1241
TaqI	TCGA	4 cut(s)	423, 461, 515, 915
TatI	WGTACW	1 cut(s)	1223
TfiI	GAWTC	2 cut(s)	232, 320
Tru1I	TTAA	2 cut(s)	653, 698
Tru9I	TTAA	2 cut(s)	653, 698
TscAI	CASTG	1 cut(s)	877
TseI	GCWGC	2 cut(s)	170, 267
TspDTI	ATGAA	6 cut(s)	341, 453, 805, 881, 965, 1194
TspRI	CASTG	1 cut(s)	877
XapI	RAATTY	6 cut(s)	257, 691, 790, 940, 1142, 1204
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	960
XspI	CTAG	2 cut(s)	153, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.