Rorug07G0239400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003971
Physical Location & Seq
Forward (+)
22052659 .. 22053296
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0239400.1

Sequence Viewer

Length: 414 bp
ATGGCAGAGAAGACCGACCAGGCTTATCCTATTGCCCCTGCAAATGGTTACACAAGAAGCGATGGAGAGTCTTTGGTATCAGAGGATGAGCTGAAACGCAAGAAGAGAATCAAGTTGTTTACCTACATTGGTATTTTCATTGTGTTTCAGATCATAGTGATGACAGTTCTTGGTCTTACTGTGATGAAAGTCAAGACTCCCAAGGCCAGATTGGGTGAAATCAGCGTCCAAACTCTCAACTCCGTCCCTGCAACACCTTCATTTGATGCAAAGTTCACAACCCAGATTAGGATCAAGAACACAAATTGGGGTCCATACAAGTTTGATGCAGGTAGTGCGACATTCCTGTACCAAGGTGTGACTATTGGGCAGGTTGCTATTCCTAAATTGGGTCCATGCCAGAGTAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.11

Weight (kDa)

9.64

Isoelectric Point (pI)

22.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 320, 361
AclWI GGATC 1 cut(s) 299
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 44, 288, 389
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 311, 392
AsuHPI GGTGA 1 cut(s) 227
AvaII GGWCC 2 cut(s) 311, 392
BbsI GAAGAC 1 cut(s) 17
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 20
BfuAI ACCTGC 2 cut(s) 320, 361
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 2 cut(s) 311, 392
BmgT120I GGNCC 2 cut(s) 311, 392
BmiI GGNNCC 2 cut(s) 312, 393
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 256, 316
BpiI GAAGAC 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 201, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 288, 389
Bse8I GATNNNNATC 1 cut(s) 290
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 201, 352
BseGI GGATG 1 cut(s) 91
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 3 cut(s) 44, 288, 389
BshFI GGCC 1 cut(s) 206
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 44, 288, 389
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 150, 291
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 312, 393
BspMI ACCTGC 2 cut(s) 320, 361
BspPI GGATC 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 201, 352
BssMI GATC 2 cut(s) 150, 291
BssT1I CCWWGG 2 cut(s) 201, 352
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 166, 181
Bst6I CTCTTC 1 cut(s) 98
BstAPI GCANNNNNTGC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 2 cut(s) 153, 294
BstMBI GATC 2 cut(s) 150, 291
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 206
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 91
BveI ACCTGC 2 cut(s) 320, 361
Cfr13I GGNCC 2 cut(s) 311, 392
CseI GACGC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 349
CviAII CATG 1 cut(s) 396
CviJI RGCY 3 cut(s) 23, 91, 206
CviKI_1 RGCY 3 cut(s) 23, 91, 206
CviQI GTAC 1 cut(s) 349
DpnI GATC 2 cut(s) 152, 293
DpnII GATC 2 cut(s) 150, 291
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 201, 352
Eco47I GGWCC 2 cut(s) 311, 392
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 201, 352
ErhI CCWWGG 2 cut(s) 201, 352
FaeI CATG 1 cut(s) 399
FaiI YATR 3 cut(s) 155, 316, 397
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 395
FokI GGATG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 399
HinfI GANTC 3 cut(s) 68, 108, 196
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 120, 276
Hpy188I TCNGA 2 cut(s) 82, 150
Hpy188III TCNNGA 2 cut(s) 193, 295
Hpy8I GTNNAC 2 cut(s) 120, 276
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 2 cut(s) 166, 181
HpyCH4V TGCA 4 cut(s) 41, 251, 269, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
Hsp92II CATG 1 cut(s) 399
Kzo9I GATC 2 cut(s) 150, 291
LpnPI CCDG 9 cut(s) 5, 32, 51, 220, 261, 296, 315, 356, 359
LweI GCATC 2 cut(s) 256, 316
MaeIII GTNAC 2 cut(s) 47, 358
MalI GATC 2 cut(s) 152, 293
MboI GATC 2 cut(s) 150, 291
MboII GAAGA 2 cut(s) 22, 115
MluCI AATT 2 cut(s) 304, 386
MlyI GAGTC 2 cut(s) 77, 190
MnlI CCTC 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 2 cut(s) 150, 291
NlaIII CATG 1 cut(s) 399
NlaIV GGNNCC 2 cut(s) 312, 393
NmuCI GTSAC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 108
PleI GAGTC 2 cut(s) 76, 190
PpsI GAGTC 2 cut(s) 76, 190
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 312, 393
PspPI GGNCC 2 cut(s) 311, 392
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 158
Sau3AI GATC 2 cut(s) 150, 291
Sau96I GGNCC 2 cut(s) 311, 392
SchI GAGTC 2 cut(s) 77, 190
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 93, 125, 259, 334, 358, 375
SfaNI GCATC 2 cut(s) 256, 316
SinI GGWCC 2 cut(s) 311, 392
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 2 cut(s) 304, 386
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 2 cut(s) 201, 352
TaaI ACNGT 2 cut(s) 166, 181
TaqII GACCGA 1 cut(s) 29
TasI AATT 2 cut(s) 304, 386
TfiI GAWTC 1 cut(s) 108
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspDTI ATGAA 3 cut(s) 127, 200, 249
TspGWI ACGGA 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 311, 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.