Rroxscaffold_3G00232490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003971
Physical Location & Seq
Forward (+)
18129550 .. 18131775
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232490.1

Sequence Viewer

Length: 603 bp
ATGGTGATCAGGATTGAAGATTTGAGGAAAAACGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGAGGATGTGAAAGCCATGGCCAGCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGAGTTGATGATGAATAGGAACAAACCAGAAGCAGCTTTCTCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATATAGAGGGATGCAAAAGCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTCCCACTACAGAAACAGGCTTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTCTCTGAAATCGAAAAAGCAGGGGATGAAGGTTTCGAAGAAATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGGTAAGAGGGTATTACCAAGTGTGCAATCCATGACTGTGGATTTTCCAAAGGAAGAATTGCAGGATCCTATTCGTGGATCAGATCACCCAAAGCCAAGATTTAGAGCAAGAGCAATAGCAATAGCAGGGAAGAGGAATGAGATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.95

Weight (kDa)

9.44

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 254, 467, 480, 493
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 8 cut(s) 17, 61, 136, 262, 299, 305, 311, 317
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 173, 570
AluI AGCT 2 cut(s) 173, 570
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 29, 277
AlwI GGATC 4 cut(s) 254, 467, 480, 493
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 170, 267
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AsuHPI GGTGA 2 cut(s) 16, 485
AsuII TTCGAA 1 cut(s) 369
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 182, 254
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 2 cut(s) 29, 277
BfmI CTRYAG 1 cut(s) 282
BglII AGATCT 1 cut(s) 203
BisI GCNGC 2 cut(s) 171, 268
BlsI GCNGC 2 cut(s) 172, 269
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 320, 352
Bpu14I TTCGAA 1 cut(s) 369
BsaBI GATNNNNATC 2 cut(s) 251, 554
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse8I GATNNNNATC 2 cut(s) 251, 554
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 79, 225, 364
BseJI GATNNNNATC 2 cut(s) 251, 554
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMII CTCAG 2 cut(s) 93, 383
BseXI GCAGC 2 cut(s) 182, 254
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 29, 277
BsmBI CGTCTC 1 cut(s) 277
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 369
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 94, 384
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 4 cut(s) 254, 467, 480, 493
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 4 cut(s) 194, 312, 321, 533
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 369
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 102, 392
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 79, 225, 364
BstKTI GATC 8 cut(s) 9, 206, 249, 475, 488, 493, 552, 558
BstMAI GTCTC 2 cut(s) 29, 277
BstMBI GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 182, 254
BstX2I RGATCY 2 cut(s) 203, 472
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 2 cut(s) 203, 472
BsuRI GGCC 1 cut(s) 89
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 79, 225, 364
Cac8I GCNNGC 1 cut(s) 91
CseI GACGC 1 cut(s) 259
CviAII CATG 2 cut(s) 85, 439
CviJI RGCY 8 cut(s) 43, 83, 89, 173, 294, 391, 502, 570
CviKI_1 RGCY 8 cut(s) 43, 83, 89, 173, 294, 391, 502, 570
DdeI CTNAG 2 cut(s) 102, 392
DpnI GATC 8 cut(s) 8, 205, 248, 474, 487, 492, 551, 557
DpnII GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 194, 312, 321, 533
EarI CTCTTC 4 cut(s) 194, 312, 321, 533
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 277
FaeI CATG 2 cut(s) 88, 442
FaiI YATR 4 cut(s) 86, 213, 440, 563
FatI CATG 2 cut(s) 84, 438
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 171, 268
FokI GGATG 3 cut(s) 86, 232, 371
Fsp4HI GCNGC 2 cut(s) 171, 268
GluI GCNGC 2 cut(s) 171, 268
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 88, 442
HinfI GANTC 1 cut(s) 232
HphI GGTGA 2 cut(s) 16, 485
Hpy188I TCNGA 5 cut(s) 103, 120, 237, 340, 490
Hpy188III TCNNGA 4 cut(s) 10, 58, 207, 553
HpyAV CCTTC 2 cut(s) 130, 356
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4V TGCA 3 cut(s) 223, 433, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 102, 392
Hsp92II CATG 2 cut(s) 88, 442
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
LguI GCTCTTC 1 cut(s) 312
Lsp1109I GCAGC 2 cut(s) 182, 254
LweI GCATC 1 cut(s) 210
MalI GATC 8 cut(s) 8, 205, 248, 474, 487, 492, 551, 557
MboI GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
MboII GAAGA 7 cut(s) 29, 211, 329, 338, 383, 473, 550
MflI RGATCY 2 cut(s) 203, 472
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 5 cut(s) 257, 300, 306, 312, 464
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 7 cut(s) 18, 64, 209, 237, 322, 408, 534
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 587
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NdeII GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
NlaIII CATG 2 cut(s) 88, 442
NlaIV GGNNCC 1 cut(s) 474
NspV TTCGAA 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 2 cut(s) 172, 269
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 474
PsuI RGATCY 2 cut(s) 203, 472
RseI CAYNNNNRTG 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 2 cut(s) 171, 268
Sau3AI GATC 8 cut(s) 6, 203, 246, 472, 485, 490, 549, 555
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 336
SetI ASST 4 cut(s) 175, 333, 367, 572
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 5 cut(s) 257, 300, 306, 312, 464
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 345, 369, 383
TasI AATT 5 cut(s) 257, 300, 306, 312, 464
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TseI GCWGC 2 cut(s) 170, 267
TspDTI ATGAA 2 cut(s) 164, 375
XapI RAATTY 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.