RchiOBHm_Chr7g0226961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003971
Physical Location & Seq
Forward (+)
50340498 .. 50342055
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20325

Sequence Viewer

Length: 681 bp
ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCTGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGACTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCCCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGCTCTGTTTCCCCTGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCGAAGACATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTGTTACCAAGTGTGCAATCGATCACTGAGTATTTTCCAAAGGAAGAATTGCAGGATCGTATTCGTGGATCAGATCACCCAAAGCCAAGAGCAAGAGCAATAGCAATAGCAGGGAAGAGGAATGAGATCAAGATCAGTATGACCAGCTTTGCTTTGTCCTTGTTAATCTGCTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.66

Weight (kDa)

9.68

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 217, 260, 564, 577
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 8 cut(s) 17, 61, 136, 268, 382, 388, 394, 400
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 648
AluI AGCT 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 29, 283
AlwI GGATC 4 cut(s) 217, 260, 564, 577
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 170, 273
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AsuHPI GGTGA 2 cut(s) 16, 569
AsuII TTCGAA 1 cut(s) 453
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 182, 260
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 364
BcoDI GTCTC 2 cut(s) 29, 283
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 203
BisI GCNGC 2 cut(s) 171, 274
BlsI GCNGC 2 cut(s) 172, 275
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 521
BsaBI GATNNNNATC 3 cut(s) 208, 257, 632
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse8I GATNNNNATC 3 cut(s) 208, 257, 632
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 3 cut(s) 208, 257, 632
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 93, 467, 519
BseXI GCAGC 2 cut(s) 182, 260
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 29, 283
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 453
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 94, 468, 520
BspDI ATCGAT 1 cut(s) 521
BspHI TCATGA 1 cut(s) 358
BspPI GGATC 4 cut(s) 217, 260, 564, 577
BspQI GCTCTTC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 4 cut(s) 194, 395, 404, 611
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 102, 476, 528
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 225
BstMAI GTCTC 2 cut(s) 29, 283
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 182, 260
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 203, 209
BstYI RGATCY 2 cut(s) 203, 209
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 1 cut(s) 358
ClaI ATCGAT 1 cut(s) 521
CseI GACGC 1 cut(s) 265
CviAII CATG 2 cut(s) 85, 359
CviJI RGCY 6 cut(s) 43, 83, 89, 475, 586, 648
CviKI_1 RGCY 6 cut(s) 43, 83, 89, 475, 586, 648
DdeI CTNAG 3 cut(s) 102, 476, 528
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 4 cut(s) 194, 395, 404, 611
EarI CTCTTC 4 cut(s) 194, 395, 404, 611
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 88, 362
FaiI YATR 4 cut(s) 86, 360, 461, 641
FatI CATG 2 cut(s) 84, 358
FbaI TGATCA 2 cut(s) 6, 364
Fnu4HI GCNGC 2 cut(s) 171, 274
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 171, 274
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 171, 274
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 88, 362
HinfI GANTC 3 cut(s) 232, 238, 326
HphI GGTGA 2 cut(s) 16, 569
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 7 cut(s) 103, 120, 237, 243, 369, 424, 574
Hpy188III TCNNGA 6 cut(s) 10, 58, 207, 213, 359, 631
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 130, 440
HpyCH4V TGCA 3 cut(s) 223, 517, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 102, 476, 528
Hsp92II CATG 2 cut(s) 88, 362
Ksp22I TGATCA 2 cut(s) 6, 364
LguI GCTCTTC 1 cut(s) 395
Lsp1109I GCAGC 2 cut(s) 182, 260
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 504
MboII GAAGA 7 cut(s) 29, 211, 412, 421, 467, 557, 628
MflI RGATCY 2 cut(s) 203, 209
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 5 cut(s) 263, 383, 389, 395, 548
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 6 cut(s) 18, 209, 243, 405, 492, 612
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 1 cut(s) 665
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NlaIII CATG 2 cut(s) 88, 362
NspV TTCGAA 1 cut(s) 453
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 395
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 232, 238, 326
PkrI GCNGC 2 cut(s) 172, 275
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PsuI RGATCY 2 cut(s) 203, 209
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 2 cut(s) 171, 274
ScrFI CCNGG 1 cut(s) 40
SetI ASST 5 cut(s) 41, 295, 416, 451, 650
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 453
Sse9I AATT 5 cut(s) 263, 383, 389, 395, 548
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 4 cut(s) 429, 453, 467, 521
TasI AATT 5 cut(s) 263, 383, 389, 395, 548
TfiI GAWTC 3 cut(s) 232, 238, 326
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 1 cut(s) 532
TseI GCWGC 2 cut(s) 170, 273
TspDTI ATGAA 3 cut(s) 164, 347, 459
TspRI CASTG 1 cut(s) 532
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.