Rh7CG408800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003971
Physical Location & Seq
Forward (+)
52429009 .. 52429623
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG408800.1

Sequence Viewer

Length: 615 bp
ATGGTGATCACGATTGAAGATTTGAGGAAAAATGAGACCAGGCTTTGTGGGTCTTTCTTGAAAATGGTTGATGATGTGAAAGCCATGGCCACCGACCCATCTGAGCAACAAGTGCTTCTGACCCAGATGGTTTTGAAGGACTTGATGATGAATAGGAACAAACCAGAAGCAGCATTCCCACTTGGTTTTCCCAAAAAGAAGAGATCTGGATCTAGAGGGATGCAAAAGCAGAATCAGAATCAGAAGCAGAGGATCATCATCAAATTCAAACGCTGCGTCTCTGCCACTACAGGTATTGCTTCTTATTCTTGCTCTGTTTCCCCTGATTCTGGTATTGTTGTAAACCCAGACCCACTTCATGATGATCAGAAACAGGATTTGAAATTGAAATTGAAATTGAAGAGCAAGAAGAGGTGCTACTCTGAAATCGAACAAGCAGGCGATGAAGGTTTCGAAGACATAAACTCGAAAAGGCTGAGAAAGGGAAAGAATGATAAGAGGGTGTTACCAAGTGTGCAATCGATCACTGAGTATTTTCCAAAGGAAGAATTGCAGGATCGTATTAGTGGTATGGGTGGTTCAAATTGGAACAGTGTTGATAGAATAATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

23.13

Weight (kDa)

9.53

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 217, 260, 564
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 9 cut(s) 17, 61, 136, 268, 382, 388, 394, 400, 582
AjnI CCWGG 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 29, 283
AlwI GGATC 3 cut(s) 217, 260, 564
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 170, 273
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 453
BalI TGGCCA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 182, 260
BccI CCATC 2 cut(s) 106, 121
BciT130I CCWGG 1 cut(s) 40
BclI TGATCA 2 cut(s) 6, 364
BcoDI GTCTC 2 cut(s) 29, 283
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 203
BisI GCNGC 2 cut(s) 171, 274
BlsI GCNGC 2 cut(s) 172, 275
Bme1390I CCNGG 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 453
Bsa29I ATCGAT 1 cut(s) 521
BsaBI GATNNNNATC 2 cut(s) 208, 257
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse8I GATNNNNATC 2 cut(s) 208, 257
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 225
BseJI GATNNNNATC 2 cut(s) 208, 257
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 93, 467, 519
BseXI GCAGC 2 cut(s) 182, 260
BshFI GGCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 29, 283
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 453
Bsp143I GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 3 cut(s) 94, 468, 520
BspDI ATCGAT 1 cut(s) 521
BspHI TCATGA 1 cut(s) 358
BspPI GGATC 3 cut(s) 217, 260, 564
BspQI GCTCTTC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 3 cut(s) 194, 395, 404
BstAPI GCANNNNNTGC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 102, 476, 528
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 7 cut(s) 9, 206, 212, 255, 367, 525, 559
BstMAI GTCTC 2 cut(s) 29, 283
BstMBI GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 182, 260
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 203, 209
BstYI RGATCY 2 cut(s) 203, 209
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 1 cut(s) 89
BsuTUI ATCGAT 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 525, 598
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 1 cut(s) 358
ClaI ATCGAT 1 cut(s) 521
CseI GACGC 1 cut(s) 265
CviAII CATG 2 cut(s) 85, 359
CviJI RGCY 4 cut(s) 43, 83, 89, 475
CviKI_1 RGCY 4 cut(s) 43, 83, 89, 475
DdeI CTNAG 3 cut(s) 102, 476, 528
DpnI GATC 7 cut(s) 8, 205, 211, 254, 366, 524, 558
DpnII GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 194, 395, 404
EarI CTCTTC 3 cut(s) 194, 395, 404
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 2 cut(s) 88, 362
FaiI YATR 5 cut(s) 86, 360, 461, 572, 613
FatI CATG 2 cut(s) 84, 358
FbaI TGATCA 2 cut(s) 6, 364
Fnu4HI GCNGC 2 cut(s) 171, 274
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 171, 274
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 171, 274
HaeIII GGCC 1 cut(s) 89
HgaI GACGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 88, 362
HinfI GANTC 3 cut(s) 232, 238, 326
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 6 cut(s) 103, 120, 237, 243, 369, 424
Hpy188III TCNNGA 5 cut(s) 10, 58, 207, 213, 359
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 130, 440
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 3 cut(s) 223, 517, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 3 cut(s) 102, 476, 528
Hsp92II CATG 2 cut(s) 88, 362
Ksp22I TGATCA 2 cut(s) 6, 364
Kzo9I GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
LguI GCTCTTC 1 cut(s) 395
Lsp1109I GCAGC 2 cut(s) 182, 260
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 504
MalI GATC 7 cut(s) 8, 205, 211, 254, 366, 524, 558
MboI GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
MboII GAAGA 6 cut(s) 29, 211, 412, 421, 467, 557
MflI RGATCY 2 cut(s) 203, 209
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 6 cut(s) 263, 383, 389, 395, 548, 583
MluNI TGGCCA 1 cut(s) 89
MnlI CCTC 5 cut(s) 18, 209, 243, 405, 492
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 84
NdeII GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
NlaIII CATG 2 cut(s) 88, 362
NspV TTCGAA 1 cut(s) 453
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 395
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 232, 238, 326
PkrI GCNGC 2 cut(s) 172, 275
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 562, 594
PsuI RGATCY 2 cut(s) 203, 209
SapI GCTCTTC 1 cut(s) 395
SatI GCNGC 2 cut(s) 171, 274
Sau3AI GATC 7 cut(s) 6, 203, 209, 252, 364, 522, 556
ScrFI CCNGG 1 cut(s) 40
SetI ASST 3 cut(s) 295, 416, 451
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 288
SfuI TTCGAA 1 cut(s) 453
Sse9I AATT 6 cut(s) 263, 383, 389, 395, 548, 583
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 4 cut(s) 429, 453, 467, 521
TasI AATT 6 cut(s) 263, 383, 389, 395, 548, 583
TfiI GAWTC 3 cut(s) 232, 238, 326
TscAI CASTG 2 cut(s) 532, 598
TseI GCWGC 2 cut(s) 170, 273
TspDTI ATGAA 3 cut(s) 164, 347, 459
TspRI CASTG 2 cut(s) 532, 598
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 212
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.